Experiment: RCH2_defined_glucose_5mM with Adenine 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004487 and ABIE53_004488 are separated by 124 nucleotides ABIE53_004488 and ABIE53_004489 are separated by 69 nucleotides ABIE53_004489 and ABIE53_004490 are separated by 101 nucleotides ABIE53_004490 and ABIE53_004491 are separated by 48 nucleotides
ABIE53_004487: ABIE53_004487 - Lrp/AsnC family leucine-responsive transcriptional regulator, at 680,035 to 680,454
_004487
ABIE53_004488: ABIE53_004488 - 4'-phosphopantetheinyl transferase, at 680,579 to 681,280
_004488
ABIE53_004489: ABIE53_004489 - D-galactonate transporter, at 681,350 to 682,690
_004489
ABIE53_004490: ABIE53_004490 - hypothetical protein, at 682,792 to 683,028
_004490
ABIE53_004491: ABIE53_004491 - 3-(3-hydroxy-phenyl)propionate hydroxylase, at 683,077 to 684,786
_004491
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.374 kb on + strand, within ABIE53_004487 at 680.375 kb on - strand, within ABIE53_004487 at 680.375 kb on - strand, within ABIE53_004487 at 680.375 kb on - strand, within ABIE53_004487 at 680.397 kb on + strand, within ABIE53_004487 at 680.452 kb on + strand at 680.453 kb on - strand at 680.453 kb on - strand at 680.453 kb on - strand at 680.542 kb on + strand at 680.543 kb on - strand at 680.543 kb on - strand at 680.580 kb on + strand at 680.580 kb on + strand at 680.665 kb on + strand, within ABIE53_004488 at 680.665 kb on + strand, within ABIE53_004488 at 680.665 kb on + strand, within ABIE53_004488 at 680.666 kb on - strand, within ABIE53_004488 at 680.666 kb on - strand, within ABIE53_004488 at 680.666 kb on - strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.910 kb on - strand, within ABIE53_004488 at 680.910 kb on - strand, within ABIE53_004488 at 680.911 kb on + strand, within ABIE53_004488 at 681.031 kb on + strand, within ABIE53_004488 at 681.061 kb on + strand, within ABIE53_004488 at 681.062 kb on - strand, within ABIE53_004488 at 681.062 kb on - strand, within ABIE53_004488 at 681.307 kb on - strand at 681.317 kb on + strand at 681.334 kb on - strand at 681.335 kb on + strand at 681.555 kb on + strand, within ABIE53_004489 at 681.789 kb on + strand, within ABIE53_004489 at 681.789 kb on + strand, within ABIE53_004489 at 681.789 kb on + strand, within ABIE53_004489 at 681.790 kb on - strand, within ABIE53_004489 at 681.885 kb on + strand, within ABIE53_004489 at 681.885 kb on + strand, within ABIE53_004489 at 681.885 kb on + strand, within ABIE53_004489 at 681.886 kb on - strand, within ABIE53_004489 at 681.904 kb on - strand, within ABIE53_004489 at 682.063 kb on - strand, within ABIE53_004489 at 682.221 kb on - strand, within ABIE53_004489 at 682.269 kb on + strand, within ABIE53_004489 at 682.269 kb on + strand, within ABIE53_004489 at 682.329 kb on + strand, within ABIE53_004489 at 682.330 kb on - strand, within ABIE53_004489 at 682.330 kb on - strand, within ABIE53_004489 at 682.457 kb on + strand, within ABIE53_004489 at 682.457 kb on + strand, within ABIE53_004489 at 682.457 kb on + strand, within ABIE53_004489 at 682.458 kb on - strand, within ABIE53_004489 at 682.458 kb on - strand, within ABIE53_004489 at 682.458 kb on - strand, within ABIE53_004489 at 682.461 kb on + strand, within ABIE53_004489 at 682.462 kb on - strand, within ABIE53_004489 at 682.462 kb on - strand, within ABIE53_004489 at 682.471 kb on - strand, within ABIE53_004489 at 682.579 kb on - strand at 682.579 kb on - strand at 682.695 kb on + strand at 682.982 kb on + strand, within ABIE53_004490 at 683.183 kb on + strand at 683.184 kb on - strand at 683.310 kb on + strand, within ABIE53_004491 at 683.310 kb on + strand, within ABIE53_004491 at 683.653 kb on - strand, within ABIE53_004491
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 2 mM remove 680,374 + ABIE53_004487 0.81 +0.8 680,375 - ABIE53_004487 0.81 -0.5 680,375 - ABIE53_004487 0.81 -0.1 680,375 - ABIE53_004487 0.81 -0.2 680,397 + ABIE53_004487 0.86 +1.5 680,452 + +0.1 680,453 - -0.3 680,453 - -1.9 680,453 - -0.7 680,542 + +0.5 680,543 - +0.4 680,543 - +0.5 680,580 + +0.1 680,580 + -1.7 680,665 + ABIE53_004488 0.12 -1.9 680,665 + ABIE53_004488 0.12 +0.5 680,665 + ABIE53_004488 0.12 -0.0 680,666 - ABIE53_004488 0.12 +0.1 680,666 - ABIE53_004488 0.12 +0.2 680,666 - ABIE53_004488 0.12 -1.3 680,796 + ABIE53_004488 0.31 +1.8 680,796 + ABIE53_004488 0.31 +1.1 680,796 + ABIE53_004488 0.31 -0.2 680,796 + ABIE53_004488 0.31 +0.5 680,797 - ABIE53_004488 0.31 +0.8 680,797 - ABIE53_004488 0.31 -0.7 680,797 - ABIE53_004488 0.31 +0.1 680,797 - ABIE53_004488 0.31 +0.4 680,910 - ABIE53_004488 0.47 +0.0 680,910 - ABIE53_004488 0.47 -0.1 680,911 + ABIE53_004488 0.47 -1.2 681,031 + ABIE53_004488 0.64 -0.5 681,061 + ABIE53_004488 0.69 +0.6 681,062 - ABIE53_004488 0.69 -2.4 681,062 - ABIE53_004488 0.69 +2.2 681,307 - -1.1 681,317 + +1.3 681,334 - +0.1 681,335 + +0.5 681,555 + ABIE53_004489 0.15 -0.9 681,789 + ABIE53_004489 0.33 -0.2 681,789 + ABIE53_004489 0.33 +0.1 681,789 + ABIE53_004489 0.33 -0.5 681,790 - ABIE53_004489 0.33 -1.1 681,885 + ABIE53_004489 0.40 -1.2 681,885 + ABIE53_004489 0.40 -0.0 681,885 + ABIE53_004489 0.40 -0.7 681,886 - ABIE53_004489 0.40 -1.6 681,904 - ABIE53_004489 0.41 -0.9 682,063 - ABIE53_004489 0.53 -1.3 682,221 - ABIE53_004489 0.65 +0.2 682,269 + ABIE53_004489 0.69 +0.8 682,269 + ABIE53_004489 0.69 +1.1 682,329 + ABIE53_004489 0.73 -0.9 682,330 - ABIE53_004489 0.73 -2.7 682,330 - ABIE53_004489 0.73 -1.4 682,457 + ABIE53_004489 0.83 -0.6 682,457 + ABIE53_004489 0.83 +0.3 682,457 + ABIE53_004489 0.83 -1.5 682,458 - ABIE53_004489 0.83 -0.1 682,458 - ABIE53_004489 0.83 +1.1 682,458 - ABIE53_004489 0.83 -0.9 682,461 + ABIE53_004489 0.83 +0.2 682,462 - ABIE53_004489 0.83 +0.7 682,462 - ABIE53_004489 0.83 +0.7 682,471 - ABIE53_004489 0.84 +3.4 682,579 - -0.1 682,579 - -0.7 682,695 + +1.1 682,982 + ABIE53_004490 0.80 -0.7 683,183 + -0.7 683,184 - -2.9 683,310 + ABIE53_004491 0.14 -2.0 683,310 + ABIE53_004491 0.14 +1.3 683,653 - ABIE53_004491 0.34 +1.7
Or see this region's nucleotide sequence