Experiment: RCH2_defined_glucose_5mM with Adenine 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000463 and ABIE53_000464 are separated by 395 nucleotides ABIE53_000464 and ABIE53_000465 are separated by 322 nucleotides
ABIE53_000463: ABIE53_000463 - hypothetical protein, at 500,189 to 500,851
_000463
ABIE53_000464: ABIE53_000464 - DNA-binding protein H-NS, at 501,247 to 501,549
_000464
ABIE53_000465: ABIE53_000465 - cation diffusion facilitator family transporter, at 501,872 to 503,113
_000465
Position (kb) 501
502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 500.362 kb on + strand, within ABIE53_000463 at 500.363 kb on - strand, within ABIE53_000463 at 500.496 kb on - strand, within ABIE53_000463 at 500.496 kb on - strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.733 kb on - strand, within ABIE53_000463 at 500.733 kb on - strand, within ABIE53_000463 at 500.733 kb on - strand, within ABIE53_000463 at 500.820 kb on + strand at 500.821 kb on - strand at 500.850 kb on - strand at 500.850 kb on - strand at 500.850 kb on - strand at 500.858 kb on - strand at 500.880 kb on - strand at 500.880 kb on - strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.915 kb on - strand at 500.915 kb on - strand at 500.977 kb on + strand at 500.998 kb on + strand at 500.998 kb on + strand at 500.998 kb on + strand at 500.998 kb on + strand at 501.055 kb on - strand at 501.111 kb on + strand at 501.111 kb on + strand at 501.111 kb on + strand at 501.111 kb on + strand at 501.114 kb on + strand at 501.115 kb on - strand at 501.115 kb on - strand at 501.115 kb on - strand at 501.120 kb on + strand at 501.121 kb on - strand at 501.136 kb on + strand at 501.145 kb on + strand at 501.146 kb on - strand at 501.208 kb on + strand at 501.209 kb on - strand at 501.246 kb on + strand at 501.246 kb on + strand at 501.246 kb on + strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.256 kb on + strand at 501.266 kb on + strand at 501.266 kb on + strand at 501.322 kb on + strand, within ABIE53_000464 at 501.323 kb on - strand, within ABIE53_000464 at 501.364 kb on + strand, within ABIE53_000464 at 501.447 kb on + strand, within ABIE53_000464 at 501.447 kb on + strand, within ABIE53_000464 at 501.447 kb on + strand, within ABIE53_000464 at 501.448 kb on - strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.452 kb on - strand, within ABIE53_000464 at 501.452 kb on - strand, within ABIE53_000464 at 501.548 kb on - strand at 501.548 kb on - strand at 501.564 kb on + strand at 501.564 kb on + strand at 501.565 kb on - strand at 501.585 kb on + strand at 501.585 kb on + strand at 501.585 kb on + strand at 501.595 kb on + strand at 501.595 kb on + strand at 501.595 kb on + strand at 501.595 kb on + strand at 501.596 kb on - strand at 501.596 kb on - strand at 501.596 kb on - strand at 501.596 kb on - strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.614 kb on - strand at 501.614 kb on - strand at 501.614 kb on - strand at 501.614 kb on - strand at 501.619 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.625 kb on - strand at 501.625 kb on - strand at 501.625 kb on - strand at 501.627 kb on + strand at 501.628 kb on - strand at 501.628 kb on - strand at 501.669 kb on + strand at 501.669 kb on + strand at 501.670 kb on - strand at 501.826 kb on + strand at 501.840 kb on + strand at 501.840 kb on + strand at 501.928 kb on + strand at 501.928 kb on + strand at 501.928 kb on + strand at 501.928 kb on + strand at 501.929 kb on - strand at 501.929 kb on - strand at 501.929 kb on - strand at 501.929 kb on - strand at 501.940 kb on + strand at 501.941 kb on - strand at 501.941 kb on - strand at 501.941 kb on - strand at 501.941 kb on - strand at 501.952 kb on + strand at 501.953 kb on - strand at 501.957 kb on + strand at 501.957 kb on + strand at 501.957 kb on + strand at 501.957 kb on + strand at 501.958 kb on - strand at 501.958 kb on - strand at 501.958 kb on - strand at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.117 kb on + strand, within ABIE53_000465 at 502.117 kb on + strand, within ABIE53_000465 at 502.118 kb on - strand, within ABIE53_000465 at 502.125 kb on - strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.250 kb on - strand, within ABIE53_000465 at 502.250 kb on - strand, within ABIE53_000465 at 502.295 kb on + strand, within ABIE53_000465 at 502.295 kb on + strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.397 kb on - strand, within ABIE53_000465
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 2 mM remove 500,362 + ABIE53_000463 0.26 -0.1 500,363 - ABIE53_000463 0.26 -0.8 500,496 - ABIE53_000463 0.46 -1.6 500,496 - ABIE53_000463 0.46 +0.6 500,525 + ABIE53_000463 0.51 -0.0 500,525 + ABIE53_000463 0.51 -0.0 500,525 + ABIE53_000463 0.51 -1.0 500,525 + ABIE53_000463 0.51 -0.3 500,525 + ABIE53_000463 0.51 -0.5 500,526 - ABIE53_000463 0.51 -2.9 500,526 - ABIE53_000463 0.51 -0.3 500,526 - ABIE53_000463 0.51 -0.6 500,526 - ABIE53_000463 0.51 -0.6 500,526 - ABIE53_000463 0.51 +2.6 500,526 - ABIE53_000463 0.51 -1.3 500,526 - ABIE53_000463 0.51 +0.3 500,526 - ABIE53_000463 0.51 +1.4 500,526 - ABIE53_000463 0.51 -2.1 500,526 - ABIE53_000463 0.51 -0.7 500,526 - ABIE53_000463 0.51 +1.2 500,526 - ABIE53_000463 0.51 -1.4 500,526 - ABIE53_000463 0.51 -0.1 500,579 + ABIE53_000463 0.59 -0.5 500,579 + ABIE53_000463 0.59 +0.4 500,579 + ABIE53_000463 0.59 -0.1 500,579 + ABIE53_000463 0.59 +0.6 500,579 + ABIE53_000463 0.59 +2.2 500,579 + ABIE53_000463 0.59 -0.3 500,579 + ABIE53_000463 0.59 -0.9 500,579 + ABIE53_000463 0.59 -0.9 500,580 - ABIE53_000463 0.59 -1.3 500,580 - ABIE53_000463 0.59 +0.7 500,580 - ABIE53_000463 0.59 +2.2 500,580 - ABIE53_000463 0.59 -0.4 500,580 - ABIE53_000463 0.59 +1.2 500,580 - ABIE53_000463 0.59 -1.1 500,581 + ABIE53_000463 0.59 +0.4 500,581 + ABIE53_000463 0.59 -2.5 500,581 + ABIE53_000463 0.59 -1.9 500,581 + ABIE53_000463 0.59 -0.4 500,581 + ABIE53_000463 0.59 +0.2 500,581 + ABIE53_000463 0.59 +2.0 500,581 + ABIE53_000463 0.59 +1.0 500,581 + ABIE53_000463 0.59 +2.5 500,582 - ABIE53_000463 0.59 +1.0 500,582 - ABIE53_000463 0.59 -0.4 500,582 - ABIE53_000463 0.59 -1.0 500,582 - ABIE53_000463 0.59 -0.8 500,732 + ABIE53_000463 0.82 -0.5 500,732 + ABIE53_000463 0.82 -0.3 500,732 + ABIE53_000463 0.82 -2.5 500,732 + ABIE53_000463 0.82 +0.4 500,732 + ABIE53_000463 0.82 -1.4 500,732 + ABIE53_000463 0.82 -0.4 500,732 + ABIE53_000463 0.82 +0.0 500,732 + ABIE53_000463 0.82 +0.4 500,732 + ABIE53_000463 0.82 +0.1 500,732 + ABIE53_000463 0.82 +2.0 500,732 + ABIE53_000463 0.82 -0.4 500,732 + ABIE53_000463 0.82 +2.8 500,732 + ABIE53_000463 0.82 -1.3 500,732 + ABIE53_000463 0.82 -0.6 500,732 + ABIE53_000463 0.82 +1.4 500,732 + ABIE53_000463 0.82 -1.0 500,732 + ABIE53_000463 0.82 -0.6 500,732 + ABIE53_000463 0.82 +0.2 500,732 + ABIE53_000463 0.82 -1.1 500,732 + ABIE53_000463 0.82 +0.1 500,733 - ABIE53_000463 0.82 +2.2 500,733 - ABIE53_000463 0.82 -0.6 500,733 - ABIE53_000463 0.82 -2.2 500,820 + -1.0 500,821 - -1.3 500,850 - -1.1 500,850 - -0.6 500,850 - -0.1 500,858 - +1.0 500,880 - -0.1 500,880 - -1.9 500,914 + +0.8 500,914 + +1.3 500,914 + +0.4 500,914 + +2.5 500,914 + +0.4 500,915 - -1.9 500,915 - -2.3 500,977 + +1.4 500,998 + +4.8 500,998 + +2.0 500,998 + +1.8 500,998 + +0.0 501,055 - +2.8 501,111 + +1.5 501,111 + +0.7 501,111 + +0.2 501,111 + +1.5 501,114 + +0.7 501,115 - -2.4 501,115 - -1.2 501,115 - -0.1 501,120 + +0.4 501,121 - -0.7 501,136 + -1.4 501,145 + +1.4 501,146 - +2.2 501,208 + +0.7 501,209 - -1.0 501,246 + -3.6 501,246 + -0.8 501,246 + -0.6 501,247 - -0.4 501,247 - -0.1 501,247 - -1.7 501,247 - -0.1 501,247 - -0.1 501,247 - -0.1 501,256 + -1.2 501,266 + -3.3 501,266 + +1.2 501,322 + ABIE53_000464 0.25 -1.1 501,323 - ABIE53_000464 0.25 -1.5 501,364 + ABIE53_000464 0.39 -1.9 501,447 + ABIE53_000464 0.66 -2.0 501,447 + ABIE53_000464 0.66 -0.9 501,447 + ABIE53_000464 0.66 -1.3 501,448 - ABIE53_000464 0.66 -1.3 501,451 + ABIE53_000464 0.67 +1.2 501,451 + ABIE53_000464 0.67 -1.3 501,451 + ABIE53_000464 0.67 -0.4 501,451 + ABIE53_000464 0.67 -1.5 501,451 + ABIE53_000464 0.67 -0.6 501,452 - ABIE53_000464 0.68 -0.3 501,452 - ABIE53_000464 0.68 -0.1 501,548 - +1.4 501,548 - +0.6 501,564 + -2.1 501,564 + -1.6 501,565 - -1.3 501,585 + +0.2 501,585 + +0.2 501,585 + -1.5 501,595 + -1.1 501,595 + -1.1 501,595 + -0.1 501,595 + -1.6 501,596 - -1.0 501,596 - -1.6 501,596 - -2.5 501,596 - -0.1 501,613 + -3.5 501,613 + -0.1 501,613 + +3.8 501,613 + -2.8 501,613 + -2.1 501,613 + +0.6 501,613 + -3.0 501,613 + +1.2 501,614 - +0.4 501,614 - +1.2 501,614 - +1.4 501,614 - -0.1 501,619 + +0.4 501,624 + -0.3 501,624 + -1.6 501,624 + -1.8 501,624 + -3.2 501,624 + +3.2 501,624 + -0.8 501,624 + +2.2 501,624 + -2.7 501,625 - +0.4 501,625 - -0.7 501,625 - +0.3 501,627 + -2.1 501,628 - -1.3 501,628 - -0.9 501,669 + +1.3 501,669 + +0.6 501,670 - -1.1 501,826 + +0.6 501,840 + -0.1 501,840 + +2.4 501,928 + -2.9 501,928 + -3.8 501,928 + -2.4 501,928 + -1.3 501,929 - -0.6 501,929 - -1.8 501,929 - -2.6 501,929 - -1.8 501,940 + -1.7 501,941 - +0.6 501,941 - -2.9 501,941 - +0.2 501,941 - -1.5 501,952 + +1.8 501,953 - -4.5 501,957 + -2.2 501,957 + -2.3 501,957 + -2.7 501,957 + -1.0 501,958 - -1.8 501,958 - -2.0 501,958 - -2.2 502,109 + ABIE53_000465 0.19 -1.0 502,109 + ABIE53_000465 0.19 -2.9 502,109 + ABIE53_000465 0.19 -2.6 502,109 + ABIE53_000465 0.19 -1.1 502,109 + ABIE53_000465 0.19 -3.2 502,110 - ABIE53_000465 0.19 +0.2 502,110 - ABIE53_000465 0.19 -0.1 502,110 - ABIE53_000465 0.19 -3.3 502,110 - ABIE53_000465 0.19 -4.2 502,110 - ABIE53_000465 0.19 -0.9 502,110 - ABIE53_000465 0.19 +0.4 502,117 + ABIE53_000465 0.20 -3.4 502,117 + ABIE53_000465 0.20 -2.9 502,118 - ABIE53_000465 0.20 -2.1 502,125 - ABIE53_000465 0.20 -2.1 502,185 + ABIE53_000465 0.25 +2.2 502,185 + ABIE53_000465 0.25 -2.1 502,185 + ABIE53_000465 0.25 -2.1 502,185 + ABIE53_000465 0.25 -1.3 502,185 + ABIE53_000465 0.25 -0.1 502,185 + ABIE53_000465 0.25 -2.0 502,185 + ABIE53_000465 0.25 -0.6 502,186 - ABIE53_000465 0.25 -0.4 502,186 - ABIE53_000465 0.25 -0.8 502,186 - ABIE53_000465 0.25 -4.3 502,186 - ABIE53_000465 0.25 -0.8 502,186 - ABIE53_000465 0.25 -0.7 502,186 - ABIE53_000465 0.25 -0.1 502,250 - ABIE53_000465 0.30 +0.6 502,250 - ABIE53_000465 0.30 +2.8 502,295 + ABIE53_000465 0.34 -1.1 502,295 + ABIE53_000465 0.34 -2.0 502,296 - ABIE53_000465 0.34 -2.9 502,296 - ABIE53_000465 0.34 -1.1 502,296 - ABIE53_000465 0.34 -2.7 502,296 - ABIE53_000465 0.34 -1.6 502,296 - ABIE53_000465 0.34 -1.1 502,296 - ABIE53_000465 0.34 -1.5 502,397 - ABIE53_000465 0.42 +0.6
Or see this region's nucleotide sequence