Experiment: RCH2_defined_glucose_5mM with Adenine 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000452 and ABIE53_000453 are separated by 156 nucleotides ABIE53_000453 and ABIE53_000454 are separated by 290 nucleotides
ABIE53_000452: ABIE53_000452 - endonuclease/exonuclease/phosphatase family metal-dependent hydrolase, at 488,028 to 488,825
_000452
ABIE53_000453: ABIE53_000453 - hypothetical protein, at 488,982 to 489,521
_000453
ABIE53_000454: ABIE53_000454 - ATP-dependent Lon protease, at 489,812 to 490,789
_000454
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 488.051 kb on + strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.055 kb on - strand at 488.444 kb on + strand, within ABIE53_000452 at 488.444 kb on + strand, within ABIE53_000452 at 488.444 kb on + strand, within ABIE53_000452 at 488.444 kb on + strand, within ABIE53_000452 at 488.445 kb on - strand, within ABIE53_000452 at 488.445 kb on - strand, within ABIE53_000452 at 488.632 kb on - strand, within ABIE53_000452 at 488.674 kb on + strand, within ABIE53_000452 at 488.674 kb on + strand, within ABIE53_000452 at 488.674 kb on + strand, within ABIE53_000452 at 488.675 kb on - strand, within ABIE53_000452 at 488.675 kb on - strand, within ABIE53_000452 at 489.248 kb on + strand, within ABIE53_000453 at 489.507 kb on - strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.522 kb on - strand at 489.522 kb on - strand at 489.522 kb on - strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.606 kb on + strand at 489.606 kb on + strand at 489.607 kb on - strand at 489.633 kb on + strand at 489.634 kb on - strand at 489.687 kb on + strand at 489.688 kb on - strand at 489.688 kb on - strand at 489.698 kb on + strand at 489.698 kb on + strand at 489.747 kb on + strand at 489.748 kb on - strand at 489.784 kb on + strand at 489.785 kb on - strand at 489.785 kb on - strand at 489.785 kb on - strand at 489.785 kb on - strand at 489.837 kb on - strand at 489.846 kb on + strand at 489.847 kb on - strand at 489.866 kb on + strand at 489.866 kb on + strand at 489.866 kb on + strand at 489.866 kb on + strand at 489.866 kb on + strand at 489.867 kb on - strand at 489.867 kb on - strand at 489.867 kb on - strand at 489.867 kb on - strand at 489.867 kb on - strand at 489.939 kb on - strand, within ABIE53_000454 at 490.161 kb on + strand, within ABIE53_000454 at 490.161 kb on + strand, within ABIE53_000454 at 490.162 kb on - strand, within ABIE53_000454 at 490.184 kb on + strand, within ABIE53_000454 at 490.184 kb on + strand, within ABIE53_000454 at 490.184 kb on + strand, within ABIE53_000454 at 490.184 kb on + strand, within ABIE53_000454 at 490.184 kb on + strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.185 kb on - strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.190 kb on + strand, within ABIE53_000454 at 490.191 kb on - strand, within ABIE53_000454 at 490.191 kb on - strand, within ABIE53_000454 at 490.191 kb on - strand, within ABIE53_000454 at 490.191 kb on - strand, within ABIE53_000454 at 490.191 kb on - strand, within ABIE53_000454 at 490.191 kb on - strand, within ABIE53_000454 at 490.298 kb on + strand, within ABIE53_000454 at 490.298 kb on + strand, within ABIE53_000454 at 490.298 kb on + strand, within ABIE53_000454 at 490.298 kb on + strand, within ABIE53_000454 at 490.298 kb on + strand, within ABIE53_000454 at 490.299 kb on - strand, within ABIE53_000454 at 490.299 kb on - strand, within ABIE53_000454 at 490.315 kb on + strand, within ABIE53_000454 at 490.355 kb on + strand, within ABIE53_000454 at 490.355 kb on + strand, within ABIE53_000454 at 490.355 kb on + strand, within ABIE53_000454 at 490.355 kb on + strand, within ABIE53_000454 at 490.355 kb on + strand, within ABIE53_000454 at 490.355 kb on + strand, within ABIE53_000454 at 490.356 kb on - strand, within ABIE53_000454 at 490.356 kb on - strand, within ABIE53_000454 at 490.356 kb on - strand, within ABIE53_000454 at 490.356 kb on - strand, within ABIE53_000454 at 490.356 kb on - strand, within ABIE53_000454 at 490.376 kb on + strand, within ABIE53_000454 at 490.376 kb on + strand, within ABIE53_000454 at 490.376 kb on + strand, within ABIE53_000454 at 490.376 kb on + strand, within ABIE53_000454 at 490.377 kb on - strand, within ABIE53_000454 at 490.455 kb on + strand, within ABIE53_000454 at 490.455 kb on + strand, within ABIE53_000454 at 490.456 kb on - strand, within ABIE53_000454 at 490.456 kb on - strand, within ABIE53_000454 at 490.456 kb on - strand, within ABIE53_000454 at 490.520 kb on + strand, within ABIE53_000454 at 490.520 kb on + strand, within ABIE53_000454 at 490.520 kb on + strand, within ABIE53_000454 at 490.520 kb on + strand, within ABIE53_000454 at 490.520 kb on + strand, within ABIE53_000454 at 490.520 kb on + strand, within ABIE53_000454 at 490.521 kb on - strand, within ABIE53_000454 at 490.521 kb on - strand, within ABIE53_000454 at 490.521 kb on - strand, within ABIE53_000454 at 490.521 kb on - strand, within ABIE53_000454 at 490.521 kb on - strand, within ABIE53_000454 at 490.521 kb on - strand, within ABIE53_000454
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 2 mM remove 488,051 + +0.1 488,051 + +1.7 488,051 + +2.2 488,051 + +1.4 488,051 + -0.4 488,052 - +2.1 488,052 - +1.5 488,052 - +0.7 488,052 - -0.8 488,052 - +0.7 488,052 - +0.7 488,052 - -0.2 488,052 - +0.8 488,053 + +0.8 488,053 + +1.4 488,053 + -0.5 488,053 + -0.8 488,053 + +0.9 488,053 + -2.4 488,053 + +1.1 488,053 + +0.4 488,053 + +0.0 488,053 + -0.8 488,053 + +0.7 488,053 + +1.4 488,054 - +1.2 488,054 - -0.0 488,054 - -0.3 488,054 - -0.6 488,054 - +0.6 488,054 - -0.5 488,054 - -1.6 488,054 - +0.6 488,054 - -0.9 488,054 - +0.5 488,054 - +0.2 488,054 - -1.2 488,054 - +0.4 488,054 - +0.8 488,054 - +0.2 488,054 - -0.8 488,055 - -1.2 488,444 + ABIE53_000452 0.52 -0.6 488,444 + ABIE53_000452 0.52 +0.8 488,444 + ABIE53_000452 0.52 +0.6 488,444 + ABIE53_000452 0.52 +1.2 488,445 - ABIE53_000452 0.52 +1.5 488,445 - ABIE53_000452 0.52 +0.1 488,632 - ABIE53_000452 0.76 +3.5 488,674 + ABIE53_000452 0.81 +4.2 488,674 + ABIE53_000452 0.81 +0.2 488,674 + ABIE53_000452 0.81 -0.3 488,675 - ABIE53_000452 0.81 -0.8 488,675 - ABIE53_000452 0.81 +1.3 489,248 + ABIE53_000453 0.49 -1.5 489,507 - -0.3 489,521 + -0.3 489,521 + -1.5 489,521 + -0.4 489,521 + -0.5 489,521 + -0.2 489,521 + +0.3 489,521 + +0.7 489,521 + +0.1 489,522 - -1.5 489,522 - +1.8 489,522 - -1.0 489,572 + -1.4 489,572 + -0.8 489,572 + -0.9 489,572 + -1.1 489,572 + -0.4 489,572 + -0.7 489,572 + +0.0 489,573 - +1.0 489,573 - +3.2 489,573 - -0.3 489,573 - -0.3 489,573 - +0.7 489,606 + -0.1 489,606 + -2.2 489,607 - -0.1 489,633 + -0.3 489,634 - +1.8 489,687 + -0.8 489,688 - +0.0 489,688 - -0.9 489,698 + -0.6 489,698 + -0.3 489,747 + -0.4 489,748 - -0.4 489,784 + +0.3 489,785 - -1.9 489,785 - -1.2 489,785 - -0.4 489,785 - -2.4 489,837 - -1.5 489,846 + -0.9 489,847 - +0.5 489,866 + +0.3 489,866 + +2.2 489,866 + +0.0 489,866 + +0.2 489,866 + -0.6 489,867 - -2.3 489,867 - +1.2 489,867 - +0.7 489,867 - +0.9 489,867 - -0.6 489,939 - ABIE53_000454 0.13 -1.2 490,161 + ABIE53_000454 0.36 -0.1 490,161 + ABIE53_000454 0.36 -0.3 490,162 - ABIE53_000454 0.36 -0.2 490,184 + ABIE53_000454 0.38 +0.2 490,184 + ABIE53_000454 0.38 +0.5 490,184 + ABIE53_000454 0.38 +0.1 490,184 + ABIE53_000454 0.38 +0.2 490,184 + ABIE53_000454 0.38 -1.9 490,185 - ABIE53_000454 0.38 -0.5 490,185 - ABIE53_000454 0.38 -0.1 490,185 - ABIE53_000454 0.38 +1.2 490,185 - ABIE53_000454 0.38 +1.0 490,185 - ABIE53_000454 0.38 -1.8 490,185 - ABIE53_000454 0.38 +0.2 490,185 - ABIE53_000454 0.38 -0.8 490,185 - ABIE53_000454 0.38 -0.2 490,190 + ABIE53_000454 0.39 +1.5 490,190 + ABIE53_000454 0.39 -0.3 490,190 + ABIE53_000454 0.39 -0.1 490,190 + ABIE53_000454 0.39 -0.2 490,190 + ABIE53_000454 0.39 -0.9 490,190 + ABIE53_000454 0.39 -0.6 490,190 + ABIE53_000454 0.39 -0.1 490,190 + ABIE53_000454 0.39 +0.5 490,190 + ABIE53_000454 0.39 +0.2 490,190 + ABIE53_000454 0.39 +1.2 490,190 + ABIE53_000454 0.39 -1.0 490,190 + ABIE53_000454 0.39 -2.4 490,190 + ABIE53_000454 0.39 -0.1 490,190 + ABIE53_000454 0.39 -0.5 490,191 - ABIE53_000454 0.39 -1.4 490,191 - ABIE53_000454 0.39 -0.4 490,191 - ABIE53_000454 0.39 -2.0 490,191 - ABIE53_000454 0.39 +0.1 490,191 - ABIE53_000454 0.39 +2.2 490,191 - ABIE53_000454 0.39 +0.2 490,298 + ABIE53_000454 0.50 -1.3 490,298 + ABIE53_000454 0.50 -0.8 490,298 + ABIE53_000454 0.50 -1.9 490,298 + ABIE53_000454 0.50 -0.3 490,298 + ABIE53_000454 0.50 -1.0 490,299 - ABIE53_000454 0.50 +1.2 490,299 - ABIE53_000454 0.50 -1.6 490,315 + ABIE53_000454 0.51 -0.1 490,355 + ABIE53_000454 0.56 -0.4 490,355 + ABIE53_000454 0.56 -0.1 490,355 + ABIE53_000454 0.56 +0.3 490,355 + ABIE53_000454 0.56 -0.5 490,355 + ABIE53_000454 0.56 +0.9 490,355 + ABIE53_000454 0.56 -0.8 490,356 - ABIE53_000454 0.56 +2.1 490,356 - ABIE53_000454 0.56 -0.1 490,356 - ABIE53_000454 0.56 -0.6 490,356 - ABIE53_000454 0.56 -0.4 490,356 - ABIE53_000454 0.56 +1.1 490,376 + ABIE53_000454 0.58 -0.8 490,376 + ABIE53_000454 0.58 -2.5 490,376 + ABIE53_000454 0.58 -0.7 490,376 + ABIE53_000454 0.58 +0.2 490,377 - ABIE53_000454 0.58 +0.2 490,455 + ABIE53_000454 0.66 +0.7 490,455 + ABIE53_000454 0.66 -1.5 490,456 - ABIE53_000454 0.66 -0.6 490,456 - ABIE53_000454 0.66 -0.1 490,456 - ABIE53_000454 0.66 -0.7 490,520 + ABIE53_000454 0.72 +1.2 490,520 + ABIE53_000454 0.72 -2.1 490,520 + ABIE53_000454 0.72 -1.0 490,520 + ABIE53_000454 0.72 +0.7 490,520 + ABIE53_000454 0.72 +0.9 490,520 + ABIE53_000454 0.72 -0.1 490,521 - ABIE53_000454 0.72 +2.2 490,521 - ABIE53_000454 0.72 +0.8 490,521 - ABIE53_000454 0.72 +0.2 490,521 - ABIE53_000454 0.72 +0.8 490,521 - ABIE53_000454 0.72 +0.1 490,521 - ABIE53_000454 0.72 +2.2
Or see this region's nucleotide sequence