Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2030

Experiment: MoYLS4 with Nickel Chloride 0.75mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF15085 and DVU2028 are separated by 82 nucleotidesDVU2028 and DVU2029 are separated by 44 nucleotidesDVU2029 and DVU2030 overlap by 4 nucleotidesDVU2030 and DORF15105 overlap by 38 nucleotides DORF15085: DORF15085 - no description, at 2,110,474 to 2,111,085 DORF15085 DVU2028: DVU2028 - conserved domain protein (TIGR), at 2,111,168 to 2,111,395 DVU2028 DVU2029: DVU2029 - ISDvu2, transposase OrfA (TIGR), at 2,111,440 to 2,111,838 DVU2029 DVU2030: DVU2030 - ISDvu2, transposase OrfB (TIGR), at 2,111,835 to 2,112,677 DVU2030 DORF15105: DORF15105 - no description, at 2,112,640 to 2,113,482 DORF15105 Position (kb) 2111 2112 2113Strain fitness (log2 ratio) -1 0 1 2 3 4at 2111.229 kb on + strand, within DVU2028at 2111.244 kb on + strand, within DVU2028at 2111.258 kb on + strand, within DVU2028at 2111.266 kb on + strand, within DVU2028at 2111.302 kb on + strand, within DVU2028at 2111.302 kb on + strand, within DVU2028at 2111.310 kb on - strand, within DVU2028at 2111.311 kb on - strand, within DVU2028at 2111.334 kb on + strand, within DVU2028at 2111.334 kb on + strand, within DVU2028at 2111.342 kb on - strand, within DVU2028at 2112.848 kb on - strand, within DORF15105at 2112.898 kb on - strand, within DORF15105at 2113.049 kb on - strand, within DORF15105at 2113.142 kb on - strand, within DORF15105at 2113.339 kb on - strand, within DORF15105at 2113.471 kb on - strandat 2113.591 kb on + strandat 2113.605 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 0.75mM
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2,111,229 + DVU2028 0.27 -0.1
2,111,244 + DVU2028 0.33 +0.1
2,111,258 + DVU2028 0.39 +0.0
2,111,266 + DVU2028 0.43 -0.3
2,111,302 + DVU2028 0.59 -0.8
2,111,302 + DVU2028 0.59 -0.3
2,111,310 - DVU2028 0.62 -0.8
2,111,311 - DVU2028 0.63 -0.2
2,111,334 + DVU2028 0.73 +0.1
2,111,334 + DVU2028 0.73 +0.3
2,111,342 - DVU2028 0.76 +0.4
2,112,848 - DORF15105 0.25 -1.1
2,112,898 - DORF15105 0.31 -0.4
2,113,049 - DORF15105 0.49 -1.4
2,113,142 - DORF15105 0.60 -0.1
2,113,339 - DORF15105 0.83 -1.6
2,113,471 - -0.7
2,113,591 + -0.0
2,113,605 + +4.3

Or see this region's nucleotide sequence