Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0571

Experiment: MoYLS4 with Nickel Chloride 0.75mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflrA and DVU0570 overlap by 4 nucleotidesDVU0570 and ald are separated by 205 nucleotidesald and DVU0572 are separated by 406 nucleotides DVU0569: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 634,415 to 635,995 flrA DVU0570: DVU0570 - hypothetical protein (TIGR), at 635,992 to 636,168 DVU0570 DVU0571: ald - alanine dehydrogenase (TIGR), at 636,374 to 637,486 ald DVU0572: DVU0572 - hypothetical protein (TIGR), at 637,893 to 638,231 DVU0572 Position (kb) 636 637 638Strain fitness (log2 ratio) -2 -1 0 1at 635.440 kb on - strand, within flrAat 635.479 kb on + strand, within flrAat 635.518 kb on - strand, within flrAat 635.549 kb on - strand, within flrAat 635.553 kb on - strand, within flrAat 635.571 kb on + strand, within flrAat 635.631 kb on - strand, within flrAat 635.702 kb on + strand, within flrAat 635.775 kb on + strand, within flrAat 635.783 kb on - strand, within flrAat 635.785 kb on + strand, within flrAat 635.817 kb on + strand, within flrAat 635.836 kb on - strand, within flrAat 635.841 kb on - strandat 636.258 kb on + strandat 636.266 kb on - strandat 636.294 kb on + strandat 636.307 kb on + strandat 636.438 kb on + strandat 636.446 kb on - strandat 636.470 kb on + strandat 636.475 kb on + strandat 636.483 kb on - strandat 636.494 kb on - strand, within aldat 636.692 kb on + strand, within aldat 636.692 kb on + strand, within aldat 636.692 kb on + strand, within aldat 636.692 kb on + strand, within aldat 636.731 kb on + strand, within aldat 636.764 kb on + strand, within aldat 636.805 kb on - strand, within aldat 636.867 kb on + strand, within aldat 636.952 kb on + strand, within aldat 637.143 kb on - strand, within aldat 637.143 kb on - strand, within aldat 637.163 kb on - strand, within aldat 637.253 kb on + strand, within aldat 637.261 kb on - strand, within aldat 637.288 kb on + strand, within aldat 637.289 kb on + strand, within aldat 637.295 kb on + strand, within aldat 637.302 kb on + strand, within aldat 637.302 kb on + strand, within aldat 637.310 kb on - strand, within aldat 637.310 kb on - strand, within aldat 637.312 kb on + strand, within aldat 637.320 kb on - strand, within aldat 637.327 kb on + strand, within aldat 637.327 kb on + strand, within aldat 637.335 kb on - strand, within aldat 637.355 kb on + strand, within aldat 637.480 kb on + strandat 637.504 kb on - strandat 637.588 kb on - strandat 637.614 kb on + strandat 637.641 kb on - strandat 637.939 kb on + strand, within DVU0572at 637.939 kb on + strand, within DVU0572at 637.944 kb on + strand, within DVU0572at 637.973 kb on - strand, within DVU0572at 638.099 kb on - strand, within DVU0572at 638.156 kb on + strand, within DVU0572at 638.164 kb on - strand, within DVU0572at 638.178 kb on + strand, within DVU0572at 638.180 kb on + strand, within DVU0572at 638.184 kb on - strand, within DVU0572at 638.184 kb on - strand, within DVU0572at 638.207 kb on - strandat 638.247 kb on + strandat 638.275 kb on - strandat 638.282 kb on - strandat 638.309 kb on + strandat 638.316 kb on + strandat 638.324 kb on - strandat 638.335 kb on + strandat 638.471 kb on + strandat 638.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 0.75mM
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635,440 - flrA DVU0569 0.65 -0.5
635,479 + flrA DVU0569 0.67 -0.4
635,518 - flrA DVU0569 0.70 -0.3
635,549 - flrA DVU0569 0.72 -1.1
635,553 - flrA DVU0569 0.72 -0.1
635,571 + flrA DVU0569 0.73 -0.1
635,631 - flrA DVU0569 0.77 +0.6
635,702 + flrA DVU0569 0.81 +0.3
635,775 + flrA DVU0569 0.86 -0.3
635,783 - flrA DVU0569 0.87 -2.0
635,785 + flrA DVU0569 0.87 +0.1
635,817 + flrA DVU0569 0.89 +0.5
635,836 - flrA DVU0569 0.90 -0.6
635,841 - -0.9
636,258 + -0.0
636,266 - -0.4
636,294 + -0.2
636,307 + +0.1
636,438 + -0.3
636,446 - +0.1
636,470 + -1.5
636,475 + +0.3
636,483 - -0.6
636,494 - ald DVU0571 0.11 -0.3
636,692 + ald DVU0571 0.29 +1.0
636,692 + ald DVU0571 0.29 +0.7
636,692 + ald DVU0571 0.29 -0.0
636,692 + ald DVU0571 0.29 +0.6
636,731 + ald DVU0571 0.32 +0.2
636,764 + ald DVU0571 0.35 +0.7
636,805 - ald DVU0571 0.39 -0.1
636,867 + ald DVU0571 0.44 -0.2
636,952 + ald DVU0571 0.52 +0.8
637,143 - ald DVU0571 0.69 -0.5
637,143 - ald DVU0571 0.69 +0.3
637,163 - ald DVU0571 0.71 -1.5
637,253 + ald DVU0571 0.79 -0.8
637,261 - ald DVU0571 0.80 +0.2
637,288 + ald DVU0571 0.82 -0.1
637,289 + ald DVU0571 0.82 +1.6
637,295 + ald DVU0571 0.83 -0.2
637,302 + ald DVU0571 0.83 +0.2
637,302 + ald DVU0571 0.83 +1.6
637,310 - ald DVU0571 0.84 +0.3
637,310 - ald DVU0571 0.84 -0.3
637,312 + ald DVU0571 0.84 +0.4
637,320 - ald DVU0571 0.85 -0.0
637,327 + ald DVU0571 0.86 -0.0
637,327 + ald DVU0571 0.86 -0.4
637,335 - ald DVU0571 0.86 +1.3
637,355 + ald DVU0571 0.88 +0.4
637,480 + -0.3
637,504 - +0.7
637,588 - -0.5
637,614 + +0.3
637,641 - +1.6
637,939 + DVU0572 0.14 -1.2
637,939 + DVU0572 0.14 +0.7
637,944 + DVU0572 0.15 -0.3
637,973 - DVU0572 0.24 +0.0
638,099 - DVU0572 0.61 -0.1
638,156 + DVU0572 0.78 -1.1
638,164 - DVU0572 0.80 -1.0
638,178 + DVU0572 0.84 -0.5
638,180 + DVU0572 0.85 -1.3
638,184 - DVU0572 0.86 +0.0
638,184 - DVU0572 0.86 +0.6
638,207 - -0.1
638,247 + +0.3
638,275 - +1.6
638,282 - +0.0
638,309 + -0.2
638,316 + -0.2
638,324 - +0.2
638,335 + -0.7
638,471 + -0.0
638,480 - +0.2

Or see this region's nucleotide sequence