Experiment: MoYLS4 with Nickel Chloride 0.75mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrf and DVU0087 are separated by 915 nucleotides DVU0087 and DVU0088 overlap by 4 nucleotides
Dv5SA: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 110,870 to 110,986
rrf
DVU0087: DVU0087 - conserved domain protein (TIGR), at 111,902 to 112,396
DVU0087
DVU0088: DVU0088 - Sodium/pantothenate symporter (TIGR), at 112,393 to 113,880
DVU0088
Position (kb)
111
112
113 Strain fitness (log2 ratio)
-2
-1
0
1 at 111.502 kb on + strand at 111.508 kb on - strand at 111.508 kb on - strand at 111.510 kb on - strand at 111.513 kb on + strand at 111.632 kb on + strand at 111.687 kb on + strand at 111.729 kb on + strand at 111.803 kb on + strand at 111.819 kb on + strand at 111.860 kb on + strand at 111.938 kb on - strand at 111.952 kb on - strand, within DVU0087 at 111.965 kb on + strand, within DVU0087 at 112.013 kb on + strand, within DVU0087 at 112.146 kb on - strand, within DVU0087 at 112.241 kb on - strand, within DVU0087 at 112.356 kb on + strand at 112.404 kb on + strand at 112.412 kb on - strand at 112.451 kb on + strand at 112.513 kb on + strand at 112.515 kb on + strand at 112.515 kb on + strand at 112.744 kb on - strand, within DVU0088 at 112.857 kb on + strand, within DVU0088 at 112.964 kb on + strand, within DVU0088 at 113.046 kb on + strand, within DVU0088 at 113.058 kb on + strand, within DVU0088 at 113.162 kb on - strand, within DVU0088 at 113.177 kb on - strand, within DVU0088 at 113.177 kb on - strand, within DVU0088 at 113.285 kb on + strand, within DVU0088 at 113.345 kb on + strand, within DVU0088 at 113.353 kb on - strand, within DVU0088
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 0.75mM remove 111,502 + -1.8 111,508 - -0.8 111,508 - -0.2 111,510 - -0.5 111,513 + -1.2 111,632 + -0.0 111,687 + -0.8 111,729 + +0.1 111,803 + +0.3 111,819 + -1.2 111,860 + -0.5 111,938 - -0.2 111,952 - DVU0087 0.10 -0.6 111,965 + DVU0087 0.13 +0.1 112,013 + DVU0087 0.22 -1.0 112,146 - DVU0087 0.49 -0.8 112,241 - DVU0087 0.68 -1.0 112,356 + -0.5 112,404 + -1.8 112,412 - -0.6 112,451 + +1.0 112,513 + +0.8 112,515 + +0.4 112,515 + +0.8 112,744 - DVU0088 0.24 -2.4 112,857 + DVU0088 0.31 -0.6 112,964 + DVU0088 0.38 -0.5 113,046 + DVU0088 0.44 -0.6 113,058 + DVU0088 0.45 -1.8 113,162 - DVU0088 0.52 +0.2 113,177 - DVU0088 0.53 +0.5 113,177 - DVU0088 0.53 -0.8 113,285 + DVU0088 0.60 -1.5 113,345 + DVU0088 0.64 -1.4 113,353 - DVU0088 0.65 +0.2
Or see this region's nucleotide sequence