Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2500

Experiment: MoYLS4 with Nickel Chloride 0.75mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsZ and ftsA are separated by 49 nucleotidesftsA and DVU2501 are separated by 30 nucleotidesDVU2501 and murB overlap by 10 nucleotides DVU2499: ftsZ - cell division protein FtsZ (TIGR), at 2,609,897 to 2,611,246 ftsZ DVU2500: ftsA - cell division protein FtsA (TIGR), at 2,611,296 to 2,612,522 ftsA DVU2501: DVU2501 - cell division protein FtsQ, putative (TIGR), at 2,612,553 to 2,613,389 DVU2501 DVU2502: murB - UDP-N-acetylenolpyruvoylglucosamine reductase (TIGR), at 2,613,380 to 2,614,270 murB Position (kb) 2611 2612 2613Strain fitness (log2 ratio) -1 0 1at 2611.262 kb on + strandat 2612.548 kb on - strandat 2612.578 kb on + strandat 2613.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 0.75mM
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2,611,262 + +0.9
2,612,548 - +0.1
2,612,578 + -0.7
2,613,307 + -0.9

Or see this region's nucleotide sequence