Experiment: RCH2_defined_glucose_5mM with Adenine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004767 and ABIE53_004768 are separated by 30 nucleotides ABIE53_004768 and ABIE53_004769 are separated by 85 nucleotides ABIE53_004769 and ABIE53_004770 are separated by 72 nucleotides
ABIE53_004767: ABIE53_004767 - succinate dehydrogenase / fumarate reductase flavoprotein subunit, at 971,196 to 972,971
_004767
ABIE53_004768: ABIE53_004768 - succinate dehydrogenase / fumarate reductase iron-sulfur subunit, at 973,002 to 973,706
_004768
ABIE53_004769: ABIE53_004769 - antitoxin CptB, at 973,792 to 974,064
_004769
ABIE53_004770: ABIE53_004770 - citrate synthase, at 974,137 to 975,438
_004770
Position (kb) 973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 973.697 kb on + strand at 973.704 kb on + strand at 973.704 kb on + strand at 973.704 kb on + strand at 973.718 kb on + strand at 973.785 kb on + strand at 973.785 kb on + strand at 974.112 kb on + strand at 974.112 kb on + strand at 974.116 kb on + strand at 974.116 kb on + strand at 974.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 5 mM remove 973,697 + +1.2 973,704 + +1.3 973,704 + +1.3 973,704 + +0.2 973,718 + +2.8 973,785 + +1.3 973,785 + +0.7 974,112 + -2.0 974,112 + -0.7 974,116 + +0.3 974,116 + +2.1 974,116 + -0.7
Or see this region's nucleotide sequence