Experiment: Sucrose (C) and Glycine betaine (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00860 and PFLU_RS30215 are separated by 2 nucleotides PFLU_RS30215 and PFLU_RS00865 are separated by 973 nucleotides
PFLU_RS00860: PFLU_RS00860 - ATP-binding protein, at 190,401 to 192,233
_RS00860
PFLU_RS30215: PFLU_RS30215 - KTSC domain-containing protein, at 192,236 to 192,445
_RS30215
PFLU_RS00865: PFLU_RS00865 - hypothetical protein, at 193,419 to 195,041
_RS00865
Position (kb) 192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 191.237 kb on + strand, within PFLU_RS00860 at 191.333 kb on - strand, within PFLU_RS00860 at 191.374 kb on - strand, within PFLU_RS00860 at 191.374 kb on - strand, within PFLU_RS00860 at 191.429 kb on + strand, within PFLU_RS00860 at 191.431 kb on + strand, within PFLU_RS00860 at 191.432 kb on - strand, within PFLU_RS00860 at 191.436 kb on - strand, within PFLU_RS00860 at 191.478 kb on + strand, within PFLU_RS00860 at 191.479 kb on - strand, within PFLU_RS00860 at 191.492 kb on - strand, within PFLU_RS00860 at 191.591 kb on - strand, within PFLU_RS00860 at 191.591 kb on - strand, within PFLU_RS00860 at 191.651 kb on + strand, within PFLU_RS00860 at 191.717 kb on - strand, within PFLU_RS00860 at 191.783 kb on - strand, within PFLU_RS00860 at 191.789 kb on + strand, within PFLU_RS00860 at 191.789 kb on + strand, within PFLU_RS00860 at 191.790 kb on - strand, within PFLU_RS00860 at 191.812 kb on - strand, within PFLU_RS00860 at 192.001 kb on + strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.002 kb on - strand, within PFLU_RS00860 at 192.067 kb on + strand at 192.067 kb on + strand at 192.068 kb on - strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.129 kb on + strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.167 kb on + strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.193 kb on + strand at 192.194 kb on - strand at 192.194 kb on - strand at 192.265 kb on + strand, within PFLU_RS30215 at 192.265 kb on + strand, within PFLU_RS30215 at 192.265 kb on + strand, within PFLU_RS30215 at 192.265 kb on + strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.266 kb on - strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.270 kb on + strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.271 kb on - strand, within PFLU_RS30215 at 192.333 kb on - strand, within PFLU_RS30215 at 192.339 kb on - strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.341 kb on + strand, within PFLU_RS30215 at 192.342 kb on - strand, within PFLU_RS30215 at 192.343 kb on + strand, within PFLU_RS30215 at 192.344 kb on - strand, within PFLU_RS30215 at 192.362 kb on + strand, within PFLU_RS30215 at 192.389 kb on - strand, within PFLU_RS30215 at 192.409 kb on - strand, within PFLU_RS30215 at 192.411 kb on - strand, within PFLU_RS30215 at 192.411 kb on - strand, within PFLU_RS30215 at 192.487 kb on + strand at 192.488 kb on - strand at 192.510 kb on - strand at 192.530 kb on + strand at 192.531 kb on - strand at 192.531 kb on - strand at 192.531 kb on - strand at 192.547 kb on - strand at 192.565 kb on - strand at 192.645 kb on + strand at 192.659 kb on + strand at 192.660 kb on - strand at 192.663 kb on + strand at 192.663 kb on + strand at 192.742 kb on + strand at 192.908 kb on - strand at 192.911 kb on + strand at 192.917 kb on + strand at 192.918 kb on - strand at 192.985 kb on + strand at 193.032 kb on - strand at 193.033 kb on + strand at 193.033 kb on + strand at 193.033 kb on + strand at 193.058 kb on + strand at 193.209 kb on - strand at 193.216 kb on + strand at 193.247 kb on + strand at 193.247 kb on + strand at 193.248 kb on - strand at 193.249 kb on + strand at 193.249 kb on + strand at 193.325 kb on - strand at 193.374 kb on + strand at 193.374 kb on + strand at 193.375 kb on - strand at 193.401 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with TAPS remove 191,237 + PFLU_RS00860 0.46 -0.0 191,333 - PFLU_RS00860 0.51 +0.4 191,374 - PFLU_RS00860 0.53 -0.4 191,374 - PFLU_RS00860 0.53 -0.4 191,429 + PFLU_RS00860 0.56 -0.6 191,431 + PFLU_RS00860 0.56 -0.5 191,432 - PFLU_RS00860 0.56 -0.1 191,436 - PFLU_RS00860 0.56 -0.9 191,478 + PFLU_RS00860 0.59 -0.7 191,479 - PFLU_RS00860 0.59 +0.8 191,492 - PFLU_RS00860 0.60 -0.4 191,591 - PFLU_RS00860 0.65 -0.6 191,591 - PFLU_RS00860 0.65 -0.9 191,651 + PFLU_RS00860 0.68 -2.1 191,717 - PFLU_RS00860 0.72 +0.5 191,783 - PFLU_RS00860 0.75 -0.3 191,789 + PFLU_RS00860 0.76 +0.9 191,789 + PFLU_RS00860 0.76 +0.6 191,790 - PFLU_RS00860 0.76 -0.1 191,812 - PFLU_RS00860 0.77 +0.0 192,001 + PFLU_RS00860 0.87 -1.4 192,002 - PFLU_RS00860 0.87 +0.5 192,002 - PFLU_RS00860 0.87 +0.3 192,002 - PFLU_RS00860 0.87 +0.3 192,002 - PFLU_RS00860 0.87 -2.4 192,002 - PFLU_RS00860 0.87 +0.1 192,067 + -0.6 192,067 + -1.8 192,068 - -0.3 192,086 + -2.8 192,086 + -3.1 192,086 + -3.2 192,086 + -3.1 192,086 + -3.4 192,086 + -1.3 192,086 + -1.9 192,087 - -0.2 192,087 - -0.5 192,087 - -0.9 192,087 - -1.0 192,087 - +1.7 192,087 - -0.5 192,087 - +0.8 192,129 + -2.5 192,130 - -2.1 192,130 - +0.6 192,130 - -0.6 192,130 - +1.7 192,167 + -3.1 192,167 + -1.7 192,167 + -0.2 192,167 + -3.4 192,167 + -2.8 192,167 + -2.4 192,167 + -3.5 192,167 + -2.2 192,167 + -1.6 192,167 + -3.5 192,167 + -1.6 192,167 + -2.1 192,167 + -1.0 192,167 + +0.1 192,168 - +1.2 192,168 - +0.1 192,168 - +0.2 192,168 - +0.5 192,168 - -1.4 192,168 - +0.3 192,168 - +0.7 192,168 - -0.6 192,168 - -0.4 192,193 + -2.2 192,194 - +0.2 192,194 - +0.8 192,265 + PFLU_RS30215 0.14 -2.5 192,265 + PFLU_RS30215 0.14 -1.4 192,265 + PFLU_RS30215 0.14 -3.0 192,265 + PFLU_RS30215 0.14 -0.3 192,266 - PFLU_RS30215 0.14 -3.6 192,266 - PFLU_RS30215 0.14 -3.2 192,266 - PFLU_RS30215 0.14 -2.4 192,266 - PFLU_RS30215 0.14 -1.4 192,266 - PFLU_RS30215 0.14 -2.4 192,266 - PFLU_RS30215 0.14 -2.7 192,266 - PFLU_RS30215 0.14 -2.4 192,270 + PFLU_RS30215 0.16 -3.7 192,270 + PFLU_RS30215 0.16 -3.3 192,270 + PFLU_RS30215 0.16 -2.1 192,270 + PFLU_RS30215 0.16 -2.4 192,270 + PFLU_RS30215 0.16 -3.4 192,270 + PFLU_RS30215 0.16 -3.0 192,271 - PFLU_RS30215 0.17 -2.5 192,271 - PFLU_RS30215 0.17 -2.7 192,271 - PFLU_RS30215 0.17 -0.6 192,271 - PFLU_RS30215 0.17 -4.0 192,333 - PFLU_RS30215 0.46 -1.6 192,339 - PFLU_RS30215 0.49 -1.0 192,341 + PFLU_RS30215 0.50 -2.3 192,341 + PFLU_RS30215 0.50 -3.8 192,341 + PFLU_RS30215 0.50 -2.8 192,341 + PFLU_RS30215 0.50 -1.8 192,342 - PFLU_RS30215 0.50 -2.8 192,343 + PFLU_RS30215 0.51 -3.8 192,344 - PFLU_RS30215 0.51 -3.0 192,362 + PFLU_RS30215 0.60 -3.4 192,389 - PFLU_RS30215 0.73 -3.1 192,409 - PFLU_RS30215 0.82 -2.9 192,411 - PFLU_RS30215 0.83 -2.5 192,411 - PFLU_RS30215 0.83 -3.3 192,487 + +0.3 192,488 - +0.5 192,510 - +1.5 192,530 + -0.9 192,531 - -2.0 192,531 - -0.5 192,531 - +0.6 192,547 - +1.5 192,565 - -0.0 192,645 + -0.9 192,659 + -2.7 192,660 - +2.9 192,663 + -1.1 192,663 + -2.3 192,742 + +0.7 192,908 - -0.7 192,911 + +1.3 192,917 + -0.4 192,918 - -0.0 192,985 + -0.3 193,032 - +0.3 193,033 + -0.4 193,033 + -0.7 193,033 + -0.7 193,058 + +0.4 193,209 - -0.6 193,216 + -0.7 193,247 + -1.3 193,247 + +0.5 193,248 - -0.5 193,249 + -0.9 193,249 + +0.4 193,325 - +0.3 193,374 + +0.3 193,374 + +0.1 193,375 - -0.1 193,401 + +1.2
Or see this region's nucleotide sequence