Experiment: RCH2_defined_glucose_5mM with hydroxide 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004618 and ABIE53_004619 are separated by 33 nucleotides ABIE53_004619 and ABIE53_004620 are separated by 26 nucleotides ABIE53_004620 and ABIE53_004621 overlap by 8 nucleotides
ABIE53_004618: ABIE53_004618 - pimeloyl-ACP methyl ester carboxylesterase, at 803,860 to 804,564
_004618
ABIE53_004619: ABIE53_004619 - mannose-6-phosphate isomerase-like protein (cupin superfamily), at 804,598 to 805,125
_004619
ABIE53_004620: ABIE53_004620 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 805,152 to 805,919
_004620
ABIE53_004621: ABIE53_004621 - phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunit, at 805,912 to 806,991
_004621
Position (kb) 805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 804.252 kb on - strand, within ABIE53_004618 at 804.635 kb on + strand at 804.840 kb on + strand, within ABIE53_004619 at 804.846 kb on + strand, within ABIE53_004619 at 804.956 kb on + strand, within ABIE53_004619 at 804.977 kb on + strand, within ABIE53_004619 at 805.111 kb on - strand at 805.315 kb on + strand, within ABIE53_004620 at 805.316 kb on - strand, within ABIE53_004620 at 805.729 kb on + strand, within ABIE53_004620 at 805.730 kb on - strand, within ABIE53_004620 at 805.803 kb on + strand, within ABIE53_004620 at 805.913 kb on + strand at 805.914 kb on - strand at 806.090 kb on + strand, within ABIE53_004621 at 806.090 kb on + strand, within ABIE53_004621 at 806.090 kb on + strand, within ABIE53_004621 at 806.091 kb on - strand, within ABIE53_004621 at 806.091 kb on - strand, within ABIE53_004621 at 806.091 kb on - strand, within ABIE53_004621 at 806.141 kb on + strand, within ABIE53_004621 at 806.141 kb on + strand, within ABIE53_004621 at 806.142 kb on - strand, within ABIE53_004621 at 806.142 kb on - strand, within ABIE53_004621 at 806.142 kb on - strand, within ABIE53_004621 at 806.279 kb on + strand, within ABIE53_004621 at 806.280 kb on - strand, within ABIE53_004621 at 806.280 kb on - strand, within ABIE53_004621 at 806.450 kb on + strand, within ABIE53_004621 at 806.495 kb on + strand, within ABIE53_004621 at 806.496 kb on - strand, within ABIE53_004621 at 806.496 kb on - strand, within ABIE53_004621 at 806.535 kb on - strand, within ABIE53_004621 at 806.583 kb on + strand, within ABIE53_004621 at 806.694 kb on + strand, within ABIE53_004621 at 806.694 kb on + strand, within ABIE53_004621 at 806.694 kb on + strand, within ABIE53_004621 at 806.913 kb on - strand at 806.913 kb on - strand at 806.918 kb on + strand at 806.918 kb on + strand at 806.918 kb on + strand at 806.919 kb on - strand at 806.919 kb on - strand at 806.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with hydroxide 1 mM remove 804,252 - ABIE53_004618 0.56 -0.7 804,635 + -0.0 804,840 + ABIE53_004619 0.46 -1.9 804,846 + ABIE53_004619 0.47 -0.7 804,956 + ABIE53_004619 0.68 +0.6 804,977 + ABIE53_004619 0.72 +0.6 805,111 - -1.0 805,315 + ABIE53_004620 0.21 -1.4 805,316 - ABIE53_004620 0.21 -1.4 805,729 + ABIE53_004620 0.75 +0.0 805,730 - ABIE53_004620 0.75 -1.1 805,803 + ABIE53_004620 0.85 -1.3 805,913 + +1.6 805,914 - -1.0 806,090 + ABIE53_004621 0.16 +0.6 806,090 + ABIE53_004621 0.16 -1.0 806,090 + ABIE53_004621 0.16 -1.0 806,091 - ABIE53_004621 0.17 -0.4 806,091 - ABIE53_004621 0.17 -1.5 806,091 - ABIE53_004621 0.17 +1.6 806,141 + ABIE53_004621 0.21 -1.4 806,141 + ABIE53_004621 0.21 +1.2 806,142 - ABIE53_004621 0.21 +1.0 806,142 - ABIE53_004621 0.21 -0.3 806,142 - ABIE53_004621 0.21 -1.1 806,279 + ABIE53_004621 0.34 +0.7 806,280 - ABIE53_004621 0.34 -0.3 806,280 - ABIE53_004621 0.34 -2.8 806,450 + ABIE53_004621 0.50 +1.2 806,495 + ABIE53_004621 0.54 +0.0 806,496 - ABIE53_004621 0.54 +0.6 806,496 - ABIE53_004621 0.54 -1.1 806,535 - ABIE53_004621 0.58 -0.8 806,583 + ABIE53_004621 0.62 -0.8 806,694 + ABIE53_004621 0.72 +0.2 806,694 + ABIE53_004621 0.72 -0.9 806,694 + ABIE53_004621 0.72 +1.6 806,913 - +0.6 806,913 - +1.4 806,918 + -2.1 806,918 + -1.6 806,918 + -0.7 806,919 - -1.4 806,919 - +1.6 806,919 - +0.2
Or see this region's nucleotide sequence