Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU_tRNA-Leu-2

Experiment: MoYLS4 with electrocompetent cells (sucrose treatment)+shock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0449 and tRNA-Leu are separated by 279 nucleotidestRNA-Leu and ribF are separated by 482 nucleotides DVU0449: DVU0449 - sensor/response regulator (TIGR), at 509,426 to 513,967 DVU0449 DVU_tRNA-Leu-2: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 514,247 to 514,333 tRNA-Leu DVU0450: ribF - riboflavin biosynthesis protein RibF (TIGR), at 514,816 to 515,760 ribF Position (kb) 514 515Strain fitness (log2 ratio) -2 -1 0 1 2at 513.249 kb on - strand, within DVU0449at 513.314 kb on + strand, within DVU0449at 513.319 kb on + strand, within DVU0449at 513.319 kb on + strand, within DVU0449at 513.422 kb on + strand, within DVU0449at 513.468 kb on - strand, within DVU0449at 513.526 kb on + strandat 513.549 kb on - strandat 513.589 kb on - strandat 513.622 kb on + strandat 513.622 kb on + strandat 513.630 kb on - strandat 513.650 kb on - strandat 513.696 kb on + strandat 513.719 kb on + strandat 513.719 kb on + strandat 513.719 kb on + strandat 513.801 kb on + strandat 513.825 kb on - strandat 514.002 kb on + strandat 514.068 kb on + strandat 514.068 kb on + strandat 514.068 kb on + strandat 514.076 kb on - strandat 514.089 kb on + strandat 514.089 kb on + strandat 514.091 kb on - strandat 514.141 kb on - strandat 514.170 kb on + strandat 514.420 kb on - strandat 514.431 kb on - strandat 514.556 kb on - strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.569 kb on - strandat 514.569 kb on - strandat 514.569 kb on - strandat 514.576 kb on + strandat 514.584 kb on - strandat 514.585 kb on + strandat 514.592 kb on - strandat 514.631 kb on + strandat 514.653 kb on + strandat 514.694 kb on - strandat 514.710 kb on + strandat 514.739 kb on + strandat 514.749 kb on + strandat 514.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with electrocompetent cells (sucrose treatment)+shock
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513,249 - DVU0449 0.84 +1.5
513,314 + DVU0449 0.86 +0.4
513,319 + DVU0449 0.86 +2.1
513,319 + DVU0449 0.86 +0.7
513,422 + DVU0449 0.88 -1.3
513,468 - DVU0449 0.89 -0.7
513,526 + +1.5
513,549 - -1.8
513,589 - -2.0
513,622 + +0.1
513,622 + -0.1
513,630 - -0.4
513,650 - -1.7
513,696 + -0.5
513,719 + +0.1
513,719 + -0.2
513,719 + +0.2
513,801 + +0.1
513,825 - -0.8
514,002 + -1.4
514,068 + -0.4
514,068 + -1.5
514,068 + +0.4
514,076 - -0.5
514,089 + -0.3
514,089 + -0.2
514,091 - +0.8
514,141 - -0.2
514,170 + -0.8
514,420 - +1.1
514,431 - -0.3
514,556 - -0.3
514,561 + -0.1
514,561 + +0.2
514,561 + -0.0
514,561 + +0.9
514,569 - -0.4
514,569 - -1.8
514,569 - +1.1
514,576 + -0.3
514,584 - -0.2
514,585 + -0.4
514,592 - -1.6
514,631 + -0.1
514,653 + -0.1
514,694 - +0.1
514,710 + -0.7
514,739 + +0.3
514,749 + -0.2
514,802 - -0.6

Or see this region's nucleotide sequence