Experiment: RCH2_defined_glucose_5mM with Adenine 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004701 and ABIE53_004702 are separated by 328 nucleotides ABIE53_004702 and ABIE53_004703 are separated by 401 nucleotides ABIE53_004703 and ABIE53_004704 are separated by 371 nucleotides
ABIE53_004701: ABIE53_004701 - membrane protein DedA with SNARE-associated domain/rhodanese-related sulfurtransferase, at 885,788 to 886,780
_004701
ABIE53_004702: ABIE53_004702 - hypothetical protein, at 887,109 to 887,360
_004702
ABIE53_004703: ABIE53_004703 - putative damage-inducible protein DinB, at 887,762 to 888,367
_004703
ABIE53_004704: ABIE53_004704 - two-component system capsular synthesis sensor histidine kinase RcsC, at 888,739 to 892,266
_004704
Position (kb) 887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 886.775 kb on + strand at 886.775 kb on + strand at 886.775 kb on + strand at 886.775 kb on + strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.787 kb on - strand at 886.787 kb on - strand at 886.787 kb on - strand at 886.787 kb on - strand at 886.819 kb on + strand at 886.819 kb on + strand at 886.847 kb on - strand at 886.891 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.933 kb on - strand at 886.933 kb on - strand at 886.933 kb on - strand at 886.933 kb on - strand at 886.935 kb on + strand at 886.935 kb on + strand at 886.935 kb on + strand at 886.936 kb on - strand at 886.936 kb on - strand at 886.936 kb on - strand at 886.936 kb on - strand at 886.950 kb on - strand at 886.969 kb on + strand at 886.969 kb on + strand at 886.969 kb on + strand at 886.970 kb on - strand at 886.970 kb on - strand at 887.073 kb on + strand at 887.073 kb on + strand at 887.074 kb on - strand at 887.195 kb on - strand, within ABIE53_004702 at 887.195 kb on - strand, within ABIE53_004702 at 887.314 kb on + strand, within ABIE53_004702 at 887.314 kb on + strand, within ABIE53_004702 at 887.314 kb on + strand, within ABIE53_004702 at 887.315 kb on - strand, within ABIE53_004702 at 887.315 kb on - strand, within ABIE53_004702 at 887.351 kb on + strand at 887.398 kb on + strand at 887.398 kb on + strand at 887.398 kb on + strand at 887.398 kb on + strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.548 kb on + strand at 887.549 kb on - strand at 887.642 kb on + strand at 887.642 kb on + strand at 887.763 kb on + strand at 887.763 kb on + strand at 887.764 kb on - strand at 887.764 kb on - strand at 887.764 kb on - strand at 887.766 kb on - strand at 888.080 kb on + strand, within ABIE53_004703 at 888.080 kb on + strand, within ABIE53_004703 at 888.080 kb on + strand, within ABIE53_004703 at 888.080 kb on + strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.099 kb on + strand, within ABIE53_004703 at 888.159 kb on + strand, within ABIE53_004703 at 888.159 kb on + strand, within ABIE53_004703 at 888.159 kb on + strand, within ABIE53_004703 at 888.160 kb on - strand, within ABIE53_004703 at 888.160 kb on - strand, within ABIE53_004703 at 888.162 kb on + strand, within ABIE53_004703 at 888.162 kb on + strand, within ABIE53_004703 at 888.419 kb on + strand at 888.419 kb on + strand at 888.419 kb on + strand at 888.419 kb on + strand at 888.419 kb on + strand at 888.419 kb on + strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.420 kb on - strand at 888.475 kb on + strand at 888.475 kb on + strand at 888.475 kb on + strand at 888.476 kb on - strand at 888.476 kb on - strand at 888.476 kb on - strand at 888.476 kb on - strand at 888.476 kb on - strand at 888.476 kb on - strand at 888.559 kb on + strand at 888.559 kb on + strand at 888.559 kb on + strand at 888.559 kb on + strand at 888.559 kb on + strand at 888.560 kb on - strand at 888.560 kb on - strand at 888.560 kb on - strand at 888.560 kb on - strand at 888.560 kb on - strand at 888.560 kb on - strand at 888.570 kb on + strand at 888.570 kb on + strand at 888.570 kb on + strand at 888.570 kb on + strand at 888.571 kb on - strand at 888.571 kb on - strand at 888.585 kb on + strand at 888.585 kb on + strand at 888.585 kb on + strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.586 kb on - strand at 888.611 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.654 kb on + strand at 888.655 kb on - strand at 888.669 kb on + strand at 888.669 kb on + strand at 888.669 kb on + strand at 888.669 kb on + strand at 888.669 kb on + strand at 888.669 kb on + strand at 888.670 kb on - strand at 888.670 kb on - strand at 888.670 kb on - strand at 888.670 kb on - strand at 888.670 kb on - strand at 888.670 kb on - strand at 888.670 kb on - strand at 888.728 kb on + strand at 888.728 kb on + strand at 888.728 kb on + strand at 888.728 kb on + strand at 888.728 kb on + strand at 888.728 kb on + strand at 888.728 kb on + strand at 888.729 kb on - strand at 888.729 kb on - strand at 888.729 kb on - strand at 888.729 kb on - strand at 888.729 kb on - strand at 888.729 kb on - strand at 888.729 kb on - strand at 888.759 kb on + strand at 888.759 kb on + strand at 888.760 kb on - strand at 888.760 kb on - strand at 888.826 kb on + strand at 888.826 kb on + strand at 888.827 kb on - strand at 888.913 kb on + strand at 888.914 kb on - strand at 888.914 kb on - strand at 888.914 kb on - strand at 889.009 kb on + strand at 889.009 kb on + strand at 889.009 kb on + strand at 889.009 kb on + strand at 889.009 kb on + strand at 889.010 kb on - strand at 889.012 kb on + strand at 889.012 kb on + strand at 889.012 kb on + strand at 889.012 kb on + strand at 889.012 kb on + strand at 889.012 kb on + strand at 889.013 kb on - strand at 889.013 kb on - strand at 889.013 kb on - strand at 889.013 kb on - strand at 889.013 kb on - strand at 889.015 kb on + strand at 889.015 kb on + strand at 889.015 kb on + strand at 889.015 kb on + strand at 889.015 kb on + strand at 889.016 kb on - strand at 889.016 kb on - strand at 889.016 kb on - strand at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.186 kb on + strand, within ABIE53_004704 at 889.187 kb on - strand, within ABIE53_004704 at 889.187 kb on - strand, within ABIE53_004704 at 889.187 kb on - strand, within ABIE53_004704 at 889.270 kb on + strand, within ABIE53_004704 at 889.270 kb on + strand, within ABIE53_004704 at 889.270 kb on + strand, within ABIE53_004704 at 889.271 kb on - strand, within ABIE53_004704 at 889.271 kb on - strand, within ABIE53_004704
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 4 mM remove 886,775 + -1.2 886,775 + +1.7 886,775 + +1.1 886,775 + -1.7 886,776 - -0.0 886,776 - -2.0 886,776 - -1.4 886,776 - +1.2 886,776 - -0.2 886,776 - -1.5 886,787 - -1.2 886,787 - +0.2 886,787 - +0.2 886,787 - -0.2 886,819 + -1.4 886,819 + +0.6 886,847 - -0.9 886,891 + +1.8 886,932 + -0.5 886,932 + +1.4 886,932 + +1.6 886,933 - +0.1 886,933 - +2.8 886,933 - -0.2 886,933 - +1.4 886,935 + -0.5 886,935 + -0.2 886,935 + -1.8 886,936 - -0.1 886,936 - -0.8 886,936 - +0.0 886,936 - +0.2 886,950 - +1.2 886,969 + -0.5 886,969 + -0.5 886,969 + +0.3 886,970 - -0.5 886,970 - -0.2 887,073 + -2.5 887,073 + +2.8 887,074 - +0.4 887,195 - ABIE53_004702 0.34 +1.0 887,195 - ABIE53_004702 0.34 +0.2 887,314 + ABIE53_004702 0.81 +0.8 887,314 + ABIE53_004702 0.81 +0.6 887,314 + ABIE53_004702 0.81 +1.6 887,315 - ABIE53_004702 0.82 +1.9 887,315 - ABIE53_004702 0.82 +0.5 887,351 + -0.7 887,398 + -0.1 887,398 + -0.2 887,398 + -1.3 887,398 + -0.2 887,399 - -2.2 887,399 - -3.7 887,399 - -2.1 887,399 - -1.2 887,399 - +0.2 887,399 - -0.8 887,399 - -2.7 887,399 - -1.7 887,399 - -0.8 887,548 + -0.0 887,549 - -2.4 887,642 + -0.9 887,642 + +0.8 887,763 + -0.2 887,763 + +0.4 887,764 - +0.4 887,764 - -1.4 887,764 - -0.2 887,766 - -0.2 888,080 + ABIE53_004703 0.52 -1.2 888,080 + ABIE53_004703 0.52 -0.8 888,080 + ABIE53_004703 0.52 -0.9 888,080 + ABIE53_004703 0.52 -0.5 888,081 - ABIE53_004703 0.53 -1.4 888,081 - ABIE53_004703 0.53 -1.5 888,081 - ABIE53_004703 0.53 -0.6 888,081 - ABIE53_004703 0.53 -0.6 888,081 - ABIE53_004703 0.53 +0.8 888,081 - ABIE53_004703 0.53 +0.7 888,081 - ABIE53_004703 0.53 -0.9 888,081 - ABIE53_004703 0.53 -2.3 888,081 - ABIE53_004703 0.53 -0.7 888,099 + ABIE53_004703 0.56 -2.1 888,159 + ABIE53_004703 0.66 -1.0 888,159 + ABIE53_004703 0.66 -0.9 888,159 + ABIE53_004703 0.66 -0.6 888,160 - ABIE53_004703 0.66 -0.4 888,160 - ABIE53_004703 0.66 +1.8 888,162 + ABIE53_004703 0.66 -1.5 888,162 + ABIE53_004703 0.66 +1.4 888,419 + -1.4 888,419 + -2.1 888,419 + -1.6 888,419 + +0.9 888,419 + -2.0 888,419 + +0.2 888,420 - -3.1 888,420 - -1.8 888,420 - -0.9 888,420 - -1.7 888,420 - -2.4 888,420 - +1.0 888,420 - -1.8 888,420 - -0.2 888,475 + +0.3 888,475 + +0.8 888,475 + -0.5 888,476 - -0.2 888,476 - -1.5 888,476 - -1.3 888,476 - -0.0 888,476 - +0.4 888,476 - +0.7 888,559 + +0.2 888,559 + +0.4 888,559 + +0.4 888,559 + -1.0 888,559 + -1.1 888,560 - +0.3 888,560 - -0.2 888,560 - -0.6 888,560 - -0.8 888,560 - -0.7 888,560 - -2.2 888,570 + +1.8 888,570 + +1.2 888,570 + +0.2 888,570 + -1.4 888,571 - -0.8 888,571 - +0.4 888,585 + +0.2 888,585 + +0.6 888,585 + -1.4 888,586 - +0.5 888,586 - -0.1 888,586 - -0.6 888,586 - -0.2 888,586 - -0.7 888,586 - +0.0 888,586 - +1.4 888,586 - -1.9 888,611 + -0.5 888,613 + -0.2 888,613 + +0.9 888,613 + -1.5 888,614 - -1.4 888,614 - -0.8 888,614 - -0.4 888,614 - -1.1 888,654 + -2.0 888,655 - -1.9 888,669 + -1.8 888,669 + -0.0 888,669 + -1.7 888,669 + -1.9 888,669 + -1.2 888,669 + -0.5 888,670 - +1.8 888,670 - -2.3 888,670 - +0.3 888,670 - -0.3 888,670 - -2.4 888,670 - -0.2 888,670 - -1.8 888,728 + -2.3 888,728 + -1.4 888,728 + -2.3 888,728 + -1.1 888,728 + +1.8 888,728 + -0.8 888,728 + -1.6 888,729 - -0.3 888,729 - +0.8 888,729 - +0.4 888,729 - +1.8 888,729 - -2.7 888,729 - +0.8 888,729 - -0.6 888,759 + -0.2 888,759 + -1.2 888,760 - -0.5 888,760 - +0.6 888,826 + -1.4 888,826 + -0.2 888,827 - -0.6 888,913 + -0.3 888,914 - -0.6 888,914 - -0.2 888,914 - -0.5 889,009 + +2.8 889,009 + -1.0 889,009 + -1.5 889,009 + -0.5 889,009 + +0.2 889,010 - -0.8 889,012 + -0.2 889,012 + +0.8 889,012 + -1.2 889,012 + +0.8 889,012 + -2.4 889,012 + -0.2 889,013 - -0.8 889,013 - +1.8 889,013 - +0.1 889,013 - +0.3 889,013 - -0.7 889,015 + -0.1 889,015 + +4.1 889,015 + +0.2 889,015 + +0.4 889,015 + -0.6 889,016 - +0.2 889,016 - +0.8 889,016 - -0.3 889,186 + ABIE53_004704 0.13 +1.1 889,186 + ABIE53_004704 0.13 -0.4 889,186 + ABIE53_004704 0.13 +1.0 889,186 + ABIE53_004704 0.13 -3.1 889,186 + ABIE53_004704 0.13 +0.2 889,186 + ABIE53_004704 0.13 +0.5 889,186 + ABIE53_004704 0.13 +0.8 889,186 + ABIE53_004704 0.13 +1.8 889,187 - ABIE53_004704 0.13 -0.1 889,187 - ABIE53_004704 0.13 -1.4 889,187 - ABIE53_004704 0.13 +5.4 889,270 + ABIE53_004704 0.15 -0.2 889,270 + ABIE53_004704 0.15 -2.1 889,270 + ABIE53_004704 0.15 -1.4 889,271 - ABIE53_004704 0.15 +0.2 889,271 - ABIE53_004704 0.15 -1.3
Or see this region's nucleotide sequence