Experiment: RCH2_defined_glucose_5mM with Adenine 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004168 and ABIE53_004169 are separated by 172 nucleotides ABIE53_004169 and ABIE53_004170 are separated by 15 nucleotides ABIE53_004170 and ABIE53_004171 are separated by 2 nucleotides
ABIE53_004168: ABIE53_004168 - transcriptional regulator with XRE-family HTH domain, at 342,156 to 342,728
_004168
ABIE53_004169: ABIE53_004169 - oligopeptide transport system substrate-binding protein, at 342,901 to 344,529
_004169
ABIE53_004170: ABIE53_004170 - oligopeptide transport system permease protein, at 344,545 to 345,483
_004170
ABIE53_004171: ABIE53_004171 - oligopeptide transport system permease protein, at 345,486 to 346,400
_004171
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 341.912 kb on - strand at 341.942 kb on - strand at 342.014 kb on + strand at 342.015 kb on - strand at 342.015 kb on - strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.155 kb on + strand at 342.156 kb on - strand at 342.173 kb on + strand at 342.197 kb on - strand at 342.197 kb on - strand at 342.366 kb on + strand, within ABIE53_004168 at 342.366 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.643 kb on - strand, within ABIE53_004168 at 342.663 kb on - strand, within ABIE53_004168 at 342.841 kb on + strand at 343.310 kb on - strand, within ABIE53_004169 at 343.310 kb on - strand, within ABIE53_004169 at 343.402 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.550 kb on - strand, within ABIE53_004169 at 343.646 kb on - strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.685 kb on - strand, within ABIE53_004169 at 343.711 kb on + strand, within ABIE53_004169 at 343.712 kb on - strand, within ABIE53_004169 at 343.792 kb on + strand, within ABIE53_004169 at 343.792 kb on + strand, within ABIE53_004169 at 343.793 kb on - strand, within ABIE53_004169 at 343.793 kb on - strand, within ABIE53_004169 at 343.795 kb on + strand, within ABIE53_004169 at 343.795 kb on + strand, within ABIE53_004169 at 343.796 kb on - strand, within ABIE53_004169 at 343.798 kb on + strand, within ABIE53_004169 at 343.798 kb on + strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 344.068 kb on + strand, within ABIE53_004169 at 344.069 kb on - strand, within ABIE53_004169 at 344.164 kb on + strand, within ABIE53_004169 at 344.179 kb on - strand, within ABIE53_004169 at 344.455 kb on + strand at 344.455 kb on + strand at 344.456 kb on - strand at 344.459 kb on + strand at 344.482 kb on + strand at 344.483 kb on - strand at 344.483 kb on - strand at 344.512 kb on + strand at 344.512 kb on + strand at 344.513 kb on - strand at 344.513 kb on - strand at 344.513 kb on - strand at 344.527 kb on + strand at 344.556 kb on + strand at 344.614 kb on + strand at 344.614 kb on + strand at 344.614 kb on + strand at 344.615 kb on - strand at 344.701 kb on + strand, within ABIE53_004170 at 344.732 kb on - strand, within ABIE53_004170 at 344.741 kb on - strand, within ABIE53_004170 at 345.376 kb on + strand, within ABIE53_004170 at 345.376 kb on + strand, within ABIE53_004170 at 345.377 kb on - strand, within ABIE53_004170
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 4 mM remove 341,912 - +2.1 341,942 - -1.1 342,014 + -1.5 342,015 - -1.9 342,015 - +0.0 342,029 + -1.2 342,029 + +1.2 342,029 + -1.4 342,030 - +0.3 342,030 - -1.5 342,030 - -1.2 342,030 - -0.7 342,030 - -1.3 342,155 + +0.3 342,156 - +1.1 342,173 + -0.3 342,197 - -0.9 342,197 - +0.0 342,366 + ABIE53_004168 0.37 +1.9 342,366 + ABIE53_004168 0.37 -0.1 342,563 + ABIE53_004168 0.71 +0.2 342,563 + ABIE53_004168 0.71 -1.4 342,567 + ABIE53_004168 0.72 -0.6 342,567 + ABIE53_004168 0.72 -1.7 342,567 + ABIE53_004168 0.72 +1.5 342,567 + ABIE53_004168 0.72 +1.3 342,568 - ABIE53_004168 0.72 +0.5 342,568 - ABIE53_004168 0.72 +0.3 342,643 - ABIE53_004168 0.85 -1.1 342,663 - ABIE53_004168 0.88 -0.7 342,841 + -0.2 343,310 - ABIE53_004169 0.25 -1.1 343,310 - ABIE53_004169 0.25 -1.5 343,402 + ABIE53_004169 0.31 +1.9 343,549 + ABIE53_004169 0.40 +0.1 343,549 + ABIE53_004169 0.40 -1.9 343,549 + ABIE53_004169 0.40 +1.9 343,549 + ABIE53_004169 0.40 -0.7 343,549 + ABIE53_004169 0.40 +0.4 343,549 + ABIE53_004169 0.40 -1.1 343,550 - ABIE53_004169 0.40 -0.1 343,646 - ABIE53_004169 0.46 -1.7 343,684 + ABIE53_004169 0.48 +2.5 343,684 + ABIE53_004169 0.48 +1.9 343,684 + ABIE53_004169 0.48 +1.9 343,685 - ABIE53_004169 0.48 -0.1 343,711 + ABIE53_004169 0.50 -0.9 343,712 - ABIE53_004169 0.50 +0.3 343,792 + ABIE53_004169 0.55 +0.5 343,792 + ABIE53_004169 0.55 +0.9 343,793 - ABIE53_004169 0.55 -0.7 343,793 - ABIE53_004169 0.55 +2.4 343,795 + ABIE53_004169 0.55 -0.9 343,795 + ABIE53_004169 0.55 +1.3 343,796 - ABIE53_004169 0.55 -0.7 343,798 + ABIE53_004169 0.55 -0.1 343,798 + ABIE53_004169 0.55 -0.7 343,919 - ABIE53_004169 0.62 +0.6 343,919 - ABIE53_004169 0.62 +1.9 343,919 - ABIE53_004169 0.62 +1.6 343,919 - ABIE53_004169 0.62 -1.1 344,068 + ABIE53_004169 0.72 +0.7 344,069 - ABIE53_004169 0.72 -1.5 344,164 + ABIE53_004169 0.78 -0.7 344,179 - ABIE53_004169 0.78 -0.4 344,455 + +0.3 344,455 + +1.4 344,456 - +0.1 344,459 + +1.2 344,482 + +0.4 344,483 - -1.1 344,483 - -1.3 344,512 + -3.2 344,512 + -2.0 344,513 - -0.1 344,513 - -1.1 344,513 - -1.4 344,527 + +0.6 344,556 + +0.2 344,614 + +1.5 344,614 + -0.0 344,614 + +2.3 344,615 - -0.7 344,701 + ABIE53_004170 0.17 -0.9 344,732 - ABIE53_004170 0.20 -1.4 344,741 - ABIE53_004170 0.21 -1.3 345,376 + ABIE53_004170 0.88 -1.2 345,376 + ABIE53_004170 0.88 -2.4 345,377 - ABIE53_004170 0.89 +0.3
Or see this region's nucleotide sequence