Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003971

Experiment: RCH2_defined_glucose_5mM with Adenine 4 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_003969 and ABIE53_003970 are separated by 94 nucleotidesABIE53_003970 and ABIE53_003971 are separated by 2 nucleotidesABIE53_003971 and ABIE53_003972 overlap by 1 nucleotidesABIE53_003972 and ABIE53_003973 are separated by 46 nucleotides ABIE53_003969: ABIE53_003969 - MFS family permease, at 120,801 to 122,204 _003969 ABIE53_003970: ABIE53_003970 - carbon-monoxide dehydrogenase small subunit, at 122,299 to 122,805 _003970 ABIE53_003971: ABIE53_003971 - CO/xanthine dehydrogenase Mo-binding subunit, at 122,808 to 125,123 _003971 ABIE53_003972: ABIE53_003972 - carbon-monoxide dehydrogenase medium subunit, at 125,123 to 126,016 _003972 ABIE53_003973: ABIE53_003973 - 3-oxoadipate enol-lactonase, at 126,063 to 126,899 _003973 Position (kb) 122 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.874 kb on + strand, within ABIE53_003969at 121.951 kb on + strand, within ABIE53_003969at 122.027 kb on - strand, within ABIE53_003969at 122.027 kb on - strand, within ABIE53_003969at 122.027 kb on - strand, within ABIE53_003969at 122.105 kb on - strandat 122.379 kb on - strand, within ABIE53_003970at 122.473 kb on + strand, within ABIE53_003970at 122.474 kb on - strand, within ABIE53_003970at 122.474 kb on - strand, within ABIE53_003970at 122.694 kb on - strand, within ABIE53_003970at 122.694 kb on - strand, within ABIE53_003970at 122.695 kb on + strand, within ABIE53_003970at 122.695 kb on + strand, within ABIE53_003970at 122.695 kb on + strand, within ABIE53_003970at 122.695 kb on + strand, within ABIE53_003970at 122.696 kb on - strand, within ABIE53_003970at 122.696 kb on - strand, within ABIE53_003970at 122.696 kb on - strand, within ABIE53_003970at 122.796 kb on + strandat 122.796 kb on + strandat 122.809 kb on + strandat 122.809 kb on + strandat 122.854 kb on + strandat 123.030 kb on - strandat 123.323 kb on + strand, within ABIE53_003971at 123.323 kb on + strand, within ABIE53_003971at 123.323 kb on + strand, within ABIE53_003971at 123.323 kb on + strand, within ABIE53_003971at 123.326 kb on - strand, within ABIE53_003971at 123.345 kb on + strand, within ABIE53_003971at 123.346 kb on - strand, within ABIE53_003971at 123.376 kb on + strand, within ABIE53_003971at 123.887 kb on + strand, within ABIE53_003971at 123.918 kb on - strand, within ABIE53_003971at 123.955 kb on + strand, within ABIE53_003971at 124.018 kb on + strand, within ABIE53_003971at 124.018 kb on + strand, within ABIE53_003971at 124.114 kb on + strand, within ABIE53_003971at 124.115 kb on - strand, within ABIE53_003971at 124.306 kb on + strand, within ABIE53_003971at 124.306 kb on + strand, within ABIE53_003971at 124.528 kb on - strand, within ABIE53_003971at 124.528 kb on - strand, within ABIE53_003971at 124.668 kb on + strand, within ABIE53_003971at 124.669 kb on - strand, within ABIE53_003971at 124.802 kb on - strand, within ABIE53_003971at 124.852 kb on + strand, within ABIE53_003971at 124.852 kb on + strand, within ABIE53_003971at 124.852 kb on + strand, within ABIE53_003971at 124.855 kb on + strand, within ABIE53_003971at 124.855 kb on + strand, within ABIE53_003971at 124.856 kb on - strand, within ABIE53_003971at 124.856 kb on - strand, within ABIE53_003971at 124.856 kb on - strand, within ABIE53_003971at 124.895 kb on - strandat 124.895 kb on - strandat 124.977 kb on + strandat 125.020 kb on + strandat 125.020 kb on + strandat 125.020 kb on + strandat 125.021 kb on - strandat 125.197 kb on - strandat 125.220 kb on + strand, within ABIE53_003972at 125.221 kb on - strand, within ABIE53_003972at 125.405 kb on + strand, within ABIE53_003972at 125.405 kb on + strand, within ABIE53_003972at 125.405 kb on + strand, within ABIE53_003972at 125.406 kb on - strand, within ABIE53_003972at 125.407 kb on + strand, within ABIE53_003972at 125.472 kb on + strand, within ABIE53_003972at 125.472 kb on + strand, within ABIE53_003972at 125.473 kb on - strand, within ABIE53_003972at 125.547 kb on + strand, within ABIE53_003972at 125.550 kb on + strand, within ABIE53_003972at 125.550 kb on + strand, within ABIE53_003972at 125.650 kb on + strand, within ABIE53_003972at 125.650 kb on + strand, within ABIE53_003972at 125.651 kb on - strand, within ABIE53_003972at 125.841 kb on + strand, within ABIE53_003972at 126.065 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Adenine 4 mM
remove
121,874 + ABIE53_003969 0.76 -0.7
121,951 + ABIE53_003969 0.82 +1.3
122,027 - ABIE53_003969 0.87 -0.1
122,027 - ABIE53_003969 0.87 -0.5
122,027 - ABIE53_003969 0.87 -0.1
122,105 - +0.3
122,379 - ABIE53_003970 0.16 +0.9
122,473 + ABIE53_003970 0.34 -0.5
122,474 - ABIE53_003970 0.35 +0.1
122,474 - ABIE53_003970 0.35 +1.2
122,694 - ABIE53_003970 0.78 -1.3
122,694 - ABIE53_003970 0.78 -3.1
122,695 + ABIE53_003970 0.78 -0.7
122,695 + ABIE53_003970 0.78 +1.1
122,695 + ABIE53_003970 0.78 -0.6
122,695 + ABIE53_003970 0.78 -1.7
122,696 - ABIE53_003970 0.78 -0.5
122,696 - ABIE53_003970 0.78 -0.6
122,696 - ABIE53_003970 0.78 -0.0
122,796 + -0.1
122,796 + -1.3
122,809 + +0.0
122,809 + +0.1
122,854 + +0.4
123,030 - -0.9
123,323 + ABIE53_003971 0.22 +0.8
123,323 + ABIE53_003971 0.22 +0.9
123,323 + ABIE53_003971 0.22 -0.6
123,323 + ABIE53_003971 0.22 +0.7
123,326 - ABIE53_003971 0.22 +0.9
123,345 + ABIE53_003971 0.23 -0.3
123,346 - ABIE53_003971 0.23 +1.9
123,376 + ABIE53_003971 0.25 +1.9
123,887 + ABIE53_003971 0.47 -1.5
123,918 - ABIE53_003971 0.48 -0.5
123,955 + ABIE53_003971 0.50 +0.5
124,018 + ABIE53_003971 0.52 -0.8
124,018 + ABIE53_003971 0.52 -0.8
124,114 + ABIE53_003971 0.56 -0.1
124,115 - ABIE53_003971 0.56 +1.3
124,306 + ABIE53_003971 0.65 -0.0
124,306 + ABIE53_003971 0.65 -0.5
124,528 - ABIE53_003971 0.74 +0.4
124,528 - ABIE53_003971 0.74 -0.7
124,668 + ABIE53_003971 0.80 +0.3
124,669 - ABIE53_003971 0.80 +0.8
124,802 - ABIE53_003971 0.86 +0.1
124,852 + ABIE53_003971 0.88 -0.1
124,852 + ABIE53_003971 0.88 +2.6
124,852 + ABIE53_003971 0.88 +1.9
124,855 + ABIE53_003971 0.88 +1.1
124,855 + ABIE53_003971 0.88 +0.1
124,856 - ABIE53_003971 0.88 -1.2
124,856 - ABIE53_003971 0.88 -0.9
124,856 - ABIE53_003971 0.88 +1.2
124,895 - +1.5
124,895 - -1.2
124,977 + -0.4
125,020 + +1.3
125,020 + +0.6
125,020 + -0.5
125,021 - -1.7
125,197 - +1.1
125,220 + ABIE53_003972 0.11 -0.1
125,221 - ABIE53_003972 0.11 +0.0
125,405 + ABIE53_003972 0.32 +1.9
125,405 + ABIE53_003972 0.32 -0.1
125,405 + ABIE53_003972 0.32 +1.5
125,406 - ABIE53_003972 0.32 -1.7
125,407 + ABIE53_003972 0.32 +1.3
125,472 + ABIE53_003972 0.39 -0.7
125,472 + ABIE53_003972 0.39 -1.3
125,473 - ABIE53_003972 0.39 +2.1
125,547 + ABIE53_003972 0.47 -0.0
125,550 + ABIE53_003972 0.48 -0.4
125,550 + ABIE53_003972 0.48 +1.4
125,650 + ABIE53_003972 0.59 +0.3
125,650 + ABIE53_003972 0.59 +0.8
125,651 - ABIE53_003972 0.59 -0.7
125,841 + ABIE53_003972 0.80 +0.5
126,065 - -0.6

Or see this region's nucleotide sequence