Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22675 and HSERO_RS22680 are separated by 201 nucleotides HSERO_RS22680 and HSERO_RS22685 are separated by 57 nucleotides
HSERO_RS22675: HSERO_RS22675 - chemotaxis protein, at 5,198,860 to 5,200,653
_RS22675
HSERO_RS22680: HSERO_RS22680 - histidine ammonia-lyase, at 5,200,855 to 5,202,483
_RS22680
HSERO_RS22685: HSERO_RS22685 - allantoate amidohydrolase, at 5,202,541 to 5,203,794
_RS22685
Position (kb) 5200
5201
5202
5203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5200.072 kb on + strand, within HSERO_RS22675 at 5200.079 kb on - strand, within HSERO_RS22675 at 5200.276 kb on + strand, within HSERO_RS22675 at 5200.284 kb on - strand, within HSERO_RS22675 at 5200.534 kb on + strand at 5200.562 kb on - strand at 5200.584 kb on - strand at 5200.620 kb on + strand at 5200.620 kb on + strand at 5200.628 kb on - strand at 5200.690 kb on + strand at 5200.693 kb on + strand at 5200.695 kb on + strand at 5200.737 kb on - strand at 5201.009 kb on + strand at 5201.087 kb on + strand, within HSERO_RS22680 at 5201.155 kb on - strand, within HSERO_RS22680 at 5201.216 kb on - strand, within HSERO_RS22680 at 5201.234 kb on - strand, within HSERO_RS22680 at 5201.264 kb on + strand, within HSERO_RS22680 at 5201.304 kb on + strand, within HSERO_RS22680 at 5201.306 kb on + strand, within HSERO_RS22680 at 5201.398 kb on - strand, within HSERO_RS22680 at 5201.535 kb on - strand, within HSERO_RS22680 at 5201.535 kb on - strand, within HSERO_RS22680 at 5201.584 kb on - strand, within HSERO_RS22680 at 5201.608 kb on - strand, within HSERO_RS22680 at 5201.635 kb on - strand, within HSERO_RS22680 at 5201.637 kb on + strand, within HSERO_RS22680 at 5201.677 kb on + strand, within HSERO_RS22680 at 5201.731 kb on + strand, within HSERO_RS22680 at 5201.736 kb on + strand, within HSERO_RS22680 at 5201.748 kb on + strand, within HSERO_RS22680 at 5201.812 kb on + strand, within HSERO_RS22680 at 5201.912 kb on + strand, within HSERO_RS22680 at 5201.927 kb on + strand, within HSERO_RS22680 at 5201.989 kb on - strand, within HSERO_RS22680 at 5202.030 kb on - strand, within HSERO_RS22680 at 5202.132 kb on + strand at 5202.232 kb on + strand, within HSERO_RS22680 at 5202.242 kb on + strand, within HSERO_RS22680 at 5202.412 kb on - strand at 5202.412 kb on - strand at 5202.424 kb on + strand at 5202.518 kb on - strand at 5202.568 kb on + strand at 5202.666 kb on - strand at 5202.900 kb on + strand, within HSERO_RS22685 at 5202.969 kb on + strand, within HSERO_RS22685 at 5203.002 kb on + strand, within HSERO_RS22685 at 5203.182 kb on + strand, within HSERO_RS22685 at 5203.229 kb on - strand, within HSERO_RS22685 at 5203.371 kb on - strand, within HSERO_RS22685 at 5203.376 kb on + strand, within HSERO_RS22685 at 5203.376 kb on + strand, within HSERO_RS22685 at 5203.482 kb on - strand, within HSERO_RS22685
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,200,072 + HSERO_RS22675 0.68 -0.1 5,200,079 - HSERO_RS22675 0.68 -0.7 5,200,276 + HSERO_RS22675 0.79 +0.8 5,200,284 - HSERO_RS22675 0.79 +0.6 5,200,534 + -0.4 5,200,562 - -0.4 5,200,584 - +0.1 5,200,620 + +1.3 5,200,620 + -1.0 5,200,628 - -0.9 5,200,690 + +1.1 5,200,693 + -0.3 5,200,695 + +1.6 5,200,737 - +0.0 5,201,009 + +0.6 5,201,087 + HSERO_RS22680 0.14 -2.6 5,201,155 - HSERO_RS22680 0.18 -1.3 5,201,216 - HSERO_RS22680 0.22 +0.4 5,201,234 - HSERO_RS22680 0.23 -2.3 5,201,264 + HSERO_RS22680 0.25 -0.2 5,201,304 + HSERO_RS22680 0.28 -1.0 5,201,306 + HSERO_RS22680 0.28 -0.1 5,201,398 - HSERO_RS22680 0.33 +2.0 5,201,535 - HSERO_RS22680 0.42 +1.3 5,201,535 - HSERO_RS22680 0.42 +0.3 5,201,584 - HSERO_RS22680 0.45 +0.4 5,201,608 - HSERO_RS22680 0.46 -0.3 5,201,635 - HSERO_RS22680 0.48 -1.9 5,201,637 + HSERO_RS22680 0.48 -0.9 5,201,677 + HSERO_RS22680 0.50 -0.0 5,201,731 + HSERO_RS22680 0.54 +0.4 5,201,736 + HSERO_RS22680 0.54 +1.4 5,201,748 + HSERO_RS22680 0.55 +0.7 5,201,812 + HSERO_RS22680 0.59 -0.3 5,201,912 + HSERO_RS22680 0.65 +2.7 5,201,927 + HSERO_RS22680 0.66 -0.1 5,201,989 - HSERO_RS22680 0.70 -0.7 5,202,030 - HSERO_RS22680 0.72 -0.2 5,202,132 + -1.1 5,202,232 + HSERO_RS22680 0.85 +0.7 5,202,242 + HSERO_RS22680 0.85 -0.1 5,202,412 - +0.2 5,202,412 - -0.4 5,202,424 + -1.0 5,202,518 - -1.9 5,202,568 + -0.0 5,202,666 - +0.1 5,202,900 + HSERO_RS22685 0.29 -0.3 5,202,969 + HSERO_RS22685 0.34 -3.0 5,203,002 + HSERO_RS22685 0.37 -2.6 5,203,182 + HSERO_RS22685 0.51 -1.2 5,203,229 - HSERO_RS22685 0.55 -0.5 5,203,371 - HSERO_RS22685 0.66 +1.7 5,203,376 + HSERO_RS22685 0.67 -0.8 5,203,376 + HSERO_RS22685 0.67 +1.0 5,203,482 - HSERO_RS22685 0.75 -2.3
Or see this region's nucleotide sequence