Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004868

Experiment: RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM
1,089,282	+		ABIE53_004867	0.43	-1.0
1,089,283	-		ABIE53_004867	0.44	+0.1
1,089,589	+		ABIE53_004867	0.78	-0.2
1,089,589	+		ABIE53_004867	0.78	-1.7
1,089,590	-		ABIE53_004867	0.78	-0.7
1,089,657	-		ABIE53_004867	0.85	-1.4
1,089,766	+				-0.1
1,089,766	+				-0.6
1,089,766	+				-0.7
1,089,766	+				+1.0
1,089,766	+				+0.1
1,089,766	+				+1.8
1,089,766	+				-0.6
1,089,766	+				-0.1
1,089,767	-				+0.0
1,089,767	-				+0.8
1,089,767	-				-0.8
1,089,767	-				-0.2
1,089,767	-				-0.7
1,089,767	-				-0.8
1,089,767	-				+0.6
1,089,767	-				+2.6
1,089,767	-				+1.8
1,089,767	-				-0.3
1,089,769	+				-0.5
1,089,769	+				-1.0
1,089,770	-				+1.3
1,089,770	-				-0.4
1,089,770	-				+2.6
1,089,770	-				-1.7
1,089,770	-				-0.1
1,089,770	-				-2.0
1,089,825	-				+0.1
1,089,876	-				-2.1
1,089,876	-				-1.5
1,089,897	+				-1.0
1,089,897	+				-1.4
1,089,897	+				+0.0
1,089,897	+				+1.0
1,089,897	+				-0.9
1,089,897	+				-1.5
1,089,897	+				-0.9
1,089,897	+				+0.5
1,089,897	+				+0.3
1,089,897	+				+0.4
1,089,897	+				+0.2
1,089,898	-				+1.0
1,089,898	-				+3.2
1,089,898	-				-0.1
1,089,898	-				+0.8
1,089,898	-				-0.3
1,089,898	-				-1.8
1,089,898	-				-0.2
1,089,898	-				-0.2
1,089,949	+				-0.4
1,089,958	+				+0.9
1,089,958	+				-0.4
1,089,959	-				+0.7
1,089,963	+				+1.0
1,089,963	+				-1.3
1,089,964	-				-2.0
1,089,964	-				+0.2
1,090,019	+				-1.8
1,090,019	+				+0.3
1,090,019	+				-1.1
1,090,019	+				+0.5
1,090,019	+				+0.5
1,090,019	+				+0.2
1,090,019	+				+0.0
1,090,019	+				+0.6
1,090,019	+				-1.0
1,090,019	+				-1.2
1,090,019	+				+0.8
1,090,019	+				-0.4
1,090,019	+				+1.6
1,090,019	+				+0.6
1,090,019	+				-1.7
1,090,019	+				-0.3
1,090,019	+				-0.5
1,090,019	+				+0.5
1,090,019	+				+0.9
1,090,020	-				+0.0
1,090,020	-				+2.6
1,090,020	-				+0.9
1,090,020	-				+1.0
1,090,020	-				+0.0
1,090,020	-				+0.3
1,090,020	-				-0.1
1,090,020	-				-1.0
1,090,020	-				+0.0
1,090,020	-				-0.3
1,090,020	-				-1.0
1,090,020	-				-1.2
1,090,020	-				-0.7
1,090,020	-				-1.0
1,090,021	+				+0.2
1,090,021	+				+0.9
1,090,021	+				+0.1
1,090,021	+				-0.4
1,090,021	+				-0.5
1,090,021	+				-1.0
1,090,021	+				+0.6
1,090,021	+				-0.4
1,090,021	+				-0.3
1,090,021	+				+0.6
1,090,021	+				-0.4
1,090,021	+				-0.7
1,090,021	+				-0.1
1,090,021	+				+1.6
1,090,021	+				-0.9
1,090,021	+				-0.8
1,090,022	-				+0.3
1,090,022	-				-0.2
1,090,022	-				+0.2
1,090,022	-				-0.5
1,090,022	-				+0.2
1,090,022	-				-1.2
1,090,022	-				-0.5
1,090,022	-				-1.0
1,090,022	-				+0.5
1,090,022	-				-1.0
1,090,022	-				+0.5
1,090,022	-				+0.3
1,090,022	-				-1.2
1,090,022	-				-1.1
1,090,027	+				-0.8
1,090,028	-				-0.7
1,090,063	+				-0.2
1,090,063	+				-1.0
1,090,063	+				-0.8
1,090,063	+				+0.2
1,090,063	+				+0.3
1,090,064	-				-2.5
1,090,064	-				-0.3
1,090,439	-		ABIE53_004868	0.43	-0.6
1,090,463	+		ABIE53_004868	0.45	+0.4
1,090,464	-		ABIE53_004868	0.45	-2.7
1,090,464	-		ABIE53_004868	0.45	+0.5
1,090,464	-		ABIE53_004868	0.45	+0.2
1,090,837	+		ABIE53_004868	0.84	-0.9
1,090,837	+		ABIE53_004868	0.84	-0.2
1,090,837	+		ABIE53_004868	0.84	+2.6
1,090,871	+		ABIE53_004868	0.87	-2.5
1,090,871	+		ABIE53_004868	0.87	+0.0
1,090,871	+		ABIE53_004868	0.87	-0.6
1,090,871	+		ABIE53_004868	0.87	+1.6
1,090,872	-		ABIE53_004868	0.87	-0.6
1,090,930	+				+1.3
1,090,930	+				+0.2
1,090,931	-				+0.1
1,090,931	-				-0.6
1,090,931	-				+0.2
1,090,931	-				-1.3
1,090,948	+				-0.4
1,090,948	+				-0.4
1,090,957	+				+0.7
1,090,957	+				+0.1
1,090,957	+				+0.1
1,090,957	+				+1.9
1,090,957	+				-0.3
1,090,957	+				+0.3
1,090,958	-				+0.6
1,090,958	-				+0.7
1,090,958	-				-0.2
1,090,958	-				-2.1
1,090,958	-				+0.6
1,090,958	-				-0.9
1,090,958	-				+0.0
1,090,995	-				+0.1
1,090,995	-				+0.2
1,091,011	+				+0.4
1,091,011	+				+0.9
1,091,011	+				+2.2
1,091,011	+				+1.6
1,091,012	-				+0.2
1,091,012	-				-0.1
1,091,012	-				-0.2
1,091,100	+				-1.1
1,091,100	+				+0.3
1,091,100	+				-0.3
1,091,100	+				-0.4
1,091,100	+				+1.0
1,091,100	+				-1.2
1,091,100	+				-2.0
1,091,101	-				-0.8
1,091,101	-				-1.1
1,091,101	-				-0.6
1,091,101	-				+0.3
1,091,107	+				+0.0
1,091,107	+				-0.6
1,091,107	+				-0.6
1,091,107	+				-0.2
1,091,108	-				+0.0
1,091,108	-				-0.4
1,091,124	+				-0.4
1,091,124	+				+0.2
1,091,125	-				+1.6
1,091,125	-				+0.0
1,091,125	-				+0.3
1,091,125	-				+0.4
1,091,125	-				-0.4
1,091,125	-				+0.2
1,091,127	+				+1.8
1,091,127	+				+0.6
1,091,127	+				+0.7
1,091,127	+				-0.6
1,091,127	+				-0.6
1,091,127	+				-0.4
1,091,127	+				-0.4
1,091,128	-				-0.3
1,091,128	-				-0.3
1,091,128	-				+1.9
1,091,128	-				-0.4
1,091,128	-				-0.4
1,091,207	-				+0.7
1,091,270	+				-1.2
1,091,270	+				+0.4
1,091,270	+				-1.0
1,091,271	-				-1.1
1,091,271	-				-0.9
1,091,271	-				-0.4
1,091,271	-				+1.2
1,091,275	+				-1.7
1,091,276	-				-0.1
1,091,276	-				-0.4
1,091,400	-				+1.2
1,091,400	-				+0.9
1,091,422	+				-0.8
1,091,423	-				+0.8
1,091,423	-				+0.8
1,091,574	+		ABIE53_004869	0.20	+0.0
1,091,574	+		ABIE53_004869	0.20	-1.8
1,091,801	+		ABIE53_004869	0.40	+1.5
1,091,801	+		ABIE53_004869	0.40	-0.6
1,091,801	+		ABIE53_004869	0.40	+0.8
1,091,802	-		ABIE53_004869	0.40	+0.0
1,091,802	-		ABIE53_004869	0.40	-0.7
1,091,802	-		ABIE53_004869	0.40	-1.6
1,091,802	-		ABIE53_004869	0.40	+0.0
1,091,805	+		ABIE53_004869	0.40	-0.2
1,091,806	-		ABIE53_004869	0.40	+1.2
1,091,848	+		ABIE53_004869	0.43	-1.3
1,091,848	+		ABIE53_004869	0.43	+0.5
1,091,848	+		ABIE53_004869	0.43	-0.4
1,091,848	+		ABIE53_004869	0.43	+0.0
1,091,848	+		ABIE53_004869	0.43	-0.6
1,091,848	+		ABIE53_004869	0.43	-0.3
1,091,848	+		ABIE53_004869	0.43	+1.6
1,091,849	-		ABIE53_004869	0.44	-0.5
1,091,849	-		ABIE53_004869	0.44	+0.1