Experiment: RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003890 and ABIE53_003891 are separated by 49 nucleotides ABIE53_003891 and ABIE53_003892 are separated by 4 nucleotides ABIE53_003892 and ABIE53_003893 are separated by 336 nucleotides
ABIE53_003890: ABIE53_003890 - 5-methylthioribose kinase, at 28,661 to 29,929
_003890
ABIE53_003891: ABIE53_003891 - DNA-binding GntR family transcriptional regulator, at 29,979 to 30,440
_003891
ABIE53_003892: ABIE53_003892 - DNA-binding FadR family transcriptional regulator, at 30,445 to 30,699
_003892
ABIE53_003893: ABIE53_003893 - CRP/FNR family cyclic AMP-dependent transcriptional regulator, at 31,036 to 31,800
_003893
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.024 kb on + strand, within ABIE53_003890 at 29.110 kb on - strand, within ABIE53_003890 at 29.110 kb on - strand, within ABIE53_003890 at 29.353 kb on - strand, within ABIE53_003890 at 29.353 kb on - strand, within ABIE53_003890 at 29.356 kb on + strand, within ABIE53_003890 at 29.506 kb on - strand, within ABIE53_003890 at 29.506 kb on - strand, within ABIE53_003890 at 29.506 kb on - strand, within ABIE53_003890 at 29.625 kb on + strand, within ABIE53_003890 at 29.626 kb on - strand, within ABIE53_003890 at 29.626 kb on - strand, within ABIE53_003890 at 29.626 kb on - strand, within ABIE53_003890 at 29.797 kb on - strand, within ABIE53_003890 at 29.802 kb on + strand, within ABIE53_003890 at 29.803 kb on - strand at 29.803 kb on - strand at 29.890 kb on - strand at 29.912 kb on - strand at 30.025 kb on + strand at 30.026 kb on - strand, within ABIE53_003891 at 30.026 kb on - strand, within ABIE53_003891 at 30.029 kb on - strand, within ABIE53_003891 at 30.038 kb on + strand, within ABIE53_003891 at 30.039 kb on - strand, within ABIE53_003891 at 30.039 kb on - strand, within ABIE53_003891 at 30.164 kb on + strand, within ABIE53_003891 at 30.165 kb on - strand, within ABIE53_003891 at 30.165 kb on - strand, within ABIE53_003891 at 30.269 kb on - strand, within ABIE53_003891 at 30.729 kb on - strand at 30.730 kb on + strand at 30.730 kb on + strand at 30.730 kb on + strand at 30.731 kb on - strand at 30.942 kb on + strand at 30.943 kb on - strand at 30.955 kb on + strand at 30.956 kb on - strand at 30.984 kb on - strand at 31.023 kb on + strand at 31.131 kb on + strand, within ABIE53_003893 at 31.132 kb on - strand, within ABIE53_003893 at 31.147 kb on + strand, within ABIE53_003893 at 31.148 kb on - strand, within ABIE53_003893 at 31.178 kb on - strand, within ABIE53_003893 at 31.178 kb on - strand, within ABIE53_003893 at 31.200 kb on - strand, within ABIE53_003893 at 31.208 kb on - strand, within ABIE53_003893 at 31.300 kb on + strand, within ABIE53_003893 at 31.342 kb on + strand, within ABIE53_003893 at 31.343 kb on - strand, within ABIE53_003893 at 31.343 kb on - strand, within ABIE53_003893 at 31.343 kb on - strand, within ABIE53_003893 at 31.343 kb on - strand, within ABIE53_003893 at 31.343 kb on - strand, within ABIE53_003893 at 31.343 kb on - strand, within ABIE53_003893 at 31.417 kb on + strand, within ABIE53_003893 at 31.417 kb on + strand, within ABIE53_003893
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM remove 29,024 + ABIE53_003890 0.29 +1.1 29,110 - ABIE53_003890 0.35 -0.6 29,110 - ABIE53_003890 0.35 -0.9 29,353 - ABIE53_003890 0.55 -0.4 29,353 - ABIE53_003890 0.55 -0.0 29,356 + ABIE53_003890 0.55 -0.4 29,506 - ABIE53_003890 0.67 -0.9 29,506 - ABIE53_003890 0.67 -0.5 29,506 - ABIE53_003890 0.67 -1.3 29,625 + ABIE53_003890 0.76 -0.2 29,626 - ABIE53_003890 0.76 -0.7 29,626 - ABIE53_003890 0.76 +1.5 29,626 - ABIE53_003890 0.76 -1.2 29,797 - ABIE53_003890 0.90 -0.8 29,802 + ABIE53_003890 0.90 +0.1 29,803 - -0.9 29,803 - +0.5 29,890 - +0.5 29,912 - -0.0 30,025 + -0.9 30,026 - ABIE53_003891 0.10 +0.0 30,026 - ABIE53_003891 0.10 -0.4 30,029 - ABIE53_003891 0.11 +0.2 30,038 + ABIE53_003891 0.13 +0.5 30,039 - ABIE53_003891 0.13 -0.8 30,039 - ABIE53_003891 0.13 -0.6 30,164 + ABIE53_003891 0.40 +0.0 30,165 - ABIE53_003891 0.40 +0.0 30,165 - ABIE53_003891 0.40 +1.9 30,269 - ABIE53_003891 0.63 -1.4 30,729 - -0.1 30,730 + -0.6 30,730 + +1.9 30,730 + -0.7 30,731 - -1.8 30,942 + -0.4 30,943 - -0.7 30,955 + +1.0 30,956 - -0.6 30,984 - -0.9 31,023 + -1.3 31,131 + ABIE53_003893 0.12 +0.1 31,132 - ABIE53_003893 0.13 -0.9 31,147 + ABIE53_003893 0.15 -0.1 31,148 - ABIE53_003893 0.15 -0.2 31,178 - ABIE53_003893 0.19 -1.1 31,178 - ABIE53_003893 0.19 +0.5 31,200 - ABIE53_003893 0.21 -1.5 31,208 - ABIE53_003893 0.22 -1.1 31,300 + ABIE53_003893 0.35 -2.1 31,342 + ABIE53_003893 0.40 +0.7 31,343 - ABIE53_003893 0.40 +0.1 31,343 - ABIE53_003893 0.40 +0.7 31,343 - ABIE53_003893 0.40 +0.6 31,343 - ABIE53_003893 0.40 -0.1 31,343 - ABIE53_003893 0.40 -0.6 31,343 - ABIE53_003893 0.40 -1.1 31,417 + ABIE53_003893 0.50 -0.4 31,417 + ABIE53_003893 0.50 -1.1
Or see this region's nucleotide sequence