Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005065

Experiment: RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM
1,309,481	+		ABIE53_005064	0.71	-0.8
1,309,481	+		ABIE53_005064	0.71	+0.4
1,309,481	+		ABIE53_005064	0.71	-0.3
1,309,481	+		ABIE53_005064	0.71	-1.5
1,309,481	+		ABIE53_005064	0.71	+0.8
1,309,481	+		ABIE53_005064	0.71	+0.3
1,309,481	+		ABIE53_005064	0.71	+2.1
1,309,482	-		ABIE53_005064	0.71	+0.3
1,309,482	-		ABIE53_005064	0.71	+0.1
1,309,482	-		ABIE53_005064	0.71	-0.3
1,309,482	-		ABIE53_005064	0.71	+1.5
1,309,625	+		ABIE53_005064	0.76	-1.1
1,309,625	+		ABIE53_005064	0.76	+0.7
1,309,626	-		ABIE53_005064	0.76	-0.1
1,309,716	+		ABIE53_005064	0.79	+0.3
1,309,716	+		ABIE53_005064	0.79	+0.0
1,309,805	+		ABIE53_005064	0.82	+0.3
1,309,805	+		ABIE53_005064	0.82	+0.3
1,309,805	+		ABIE53_005064	0.82	+3.1
1,309,806	-		ABIE53_005064	0.83	-0.4
1,309,806	-		ABIE53_005064	0.83	-0.2
1,309,826	+		ABIE53_005064	0.83	-1.0
1,309,828	+		ABIE53_005064	0.83	-0.1
1,309,828	+		ABIE53_005064	0.83	+2.1
1,309,828	+		ABIE53_005064	0.83	-0.1
1,309,829	-		ABIE53_005064	0.83	+0.7
1,309,829	-		ABIE53_005064	0.83	-0.2
1,309,829	-		ABIE53_005064	0.83	-0.2
1,309,829	-		ABIE53_005064	0.83	+1.3
1,309,829	-		ABIE53_005064	0.83	+0.4
1,309,829	-		ABIE53_005064	0.83	-0.9
1,310,088	-				-0.1
1,310,177	+				+0.7
1,310,177	+				-0.1
1,310,177	+				+1.5
1,310,177	+				+1.3
1,310,177	+				-0.3
1,310,178	-				-0.4
1,310,178	-				-1.1
1,310,186	+				-1.9
1,310,187	-				-0.3
1,310,187	-				-1.4
1,310,256	+				-0.4
1,310,256	+				+0.3
1,310,256	+				+0.1
1,310,256	+				+0.1
1,310,256	+				+0.3
1,310,256	+				-0.9
1,310,256	+				+0.7
1,310,256	+				-1.8
1,310,256	+				-0.5
1,310,257	-				+1.3
1,310,257	-				+1.3
1,310,257	-				-0.2
1,310,257	-				-0.1
1,310,257	-				+0.9
1,310,257	-				+0.8
1,310,294	+				+1.2
1,310,294	+				+1.3
1,310,294	+				+2.5
1,310,295	-				+0.9
1,310,295	-				+0.8
1,310,303	+				+0.9
1,310,303	+				-0.2
1,310,304	-				-0.3
1,310,389	+				-1.3
1,310,395	+				-0.8
1,310,395	+				-0.8
1,310,396	-				+0.5
1,310,422	-		ABIE53_005065	0.22	+1.5
1,310,461	+		ABIE53_005065	0.52	+1.6
1,310,461	+		ABIE53_005065	0.52	+1.0
1,310,461	+		ABIE53_005065	0.52	+0.2
1,310,461	+		ABIE53_005065	0.52	+1.5
1,310,461	+		ABIE53_005065	0.52	+0.2
1,310,461	+		ABIE53_005065	0.52	+0.3
1,310,462	-		ABIE53_005065	0.53	-0.5
1,310,462	-		ABIE53_005065	0.53	+0.3
1,310,462	-		ABIE53_005065	0.53	-0.5
1,310,462	-		ABIE53_005065	0.53	+0.5
1,310,462	-		ABIE53_005065	0.53	-1.3
1,310,462	-		ABIE53_005065	0.53	+0.1
1,310,462	-		ABIE53_005065	0.53	+1.1
1,310,534	+				+1.1
1,310,534	+				+0.5
1,310,534	+				-1.9
1,310,534	+				-0.7
1,310,535	-				+0.2
1,310,535	-				+0.8
1,310,690	+		ABIE53_005066	0.17	+0.4
1,310,690	+		ABIE53_005066	0.17	-0.5
1,310,702	+		ABIE53_005066	0.18	-0.8
1,310,702	+		ABIE53_005066	0.18	-0.2
1,310,703	-		ABIE53_005066	0.18	+0.5
1,310,703	-		ABIE53_005066	0.18	-0.4
1,310,703	-		ABIE53_005066	0.18	+1.2
1,310,703	-		ABIE53_005066	0.18	-1.7
1,310,703	-		ABIE53_005066	0.18	-0.1
1,310,703	-		ABIE53_005066	0.18	+1.3
1,310,804	+		ABIE53_005066	0.29	+0.7
1,310,834	+		ABIE53_005066	0.32	-1.2
1,310,834	+		ABIE53_005066	0.32	-0.4
1,310,835	-		ABIE53_005066	0.32	-0.1
1,310,856	-		ABIE53_005066	0.34	+1.3
1,310,856	-		ABIE53_005066	0.34	-0.2
1,310,856	-		ABIE53_005066	0.34	+2.2
1,310,856	-		ABIE53_005066	0.34	+0.4
1,310,856	-		ABIE53_005066	0.34	-0.2
1,310,912	+		ABIE53_005066	0.40	-1.1
1,310,913	-		ABIE53_005066	0.40	-1.3
1,310,913	-		ABIE53_005066	0.40	+0.4
1,310,913	-		ABIE53_005066	0.40	-1.1
1,310,913	-		ABIE53_005066	0.40	-1.8
1,310,945	+		ABIE53_005066	0.43	-1.1
1,310,945	+		ABIE53_005066	0.43	+2.1
1,310,945	+		ABIE53_005066	0.43	+0.2
1,310,945	+		ABIE53_005066	0.43	+0.8
1,310,945	+		ABIE53_005066	0.43	-1.1
1,310,945	+		ABIE53_005066	0.43	-1.5
1,310,945	+		ABIE53_005066	0.43	+1.0
1,310,945	+		ABIE53_005066	0.43	+0.2
1,310,945	+		ABIE53_005066	0.43	-0.6
1,310,946	-		ABIE53_005066	0.44	-0.3
1,310,946	-		ABIE53_005066	0.44	-2.4
1,310,946	-		ABIE53_005066	0.44	+1.5
1,310,955	+		ABIE53_005066	0.45	-1.3
1,310,956	-		ABIE53_005066	0.45	+0.9
1,311,149	+		ABIE53_005066	0.65	+1.5
1,311,149	+		ABIE53_005066	0.65	+2.4
1,311,149	+		ABIE53_005066	0.65	+0.3
1,311,149	-		ABIE53_005066	0.65	+0.5
1,311,150	-		ABIE53_005066	0.65	+1.0
1,311,192	+		ABIE53_005066	0.70	-0.5
1,311,302	+		ABIE53_005066	0.81	-0.1
1,311,302	+		ABIE53_005066	0.81	+0.0
1,311,303	-		ABIE53_005066	0.81	+0.5
1,311,303	-		ABIE53_005066	0.81	-1.3
1,311,303	-		ABIE53_005066	0.81	+0.2
1,311,492	-				-0.3
1,311,492	-				+0.0
1,311,492	-				+1.3
1,311,492	-				+0.3
1,311,492	-				+0.2
1,311,492	-				-1.0