Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20730 and BWI76_RS20735 overlap by 8 nucleotides BWI76_RS20735 and BWI76_RS20740 overlap by 1 nucleotides BWI76_RS20740 and BWI76_RS20745 are separated by 133 nucleotides
BWI76_RS20730: BWI76_RS20730 - hypothetical protein, at 4,334,413 to 4,334,610
_RS20730
BWI76_RS20735: BWI76_RS20735 - N-acetylmuramoyl-L-alanine amidase, at 4,334,603 to 4,335,478
_RS20735
BWI76_RS20740: BWI76_RS20740 - coproporphyrinogen III oxidase, at 4,335,478 to 4,336,377
_RS20740
BWI76_RS20745: BWI76_RS20745 - AraC family transcriptional regulator, at 4,336,511 to 4,337,563
_RS20745
Position (kb)
4335
4336
4337 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4334.572 kb on - strand, within BWI76_RS20730 at 4334.904 kb on + strand, within BWI76_RS20735 at 4334.945 kb on - strand, within BWI76_RS20735 at 4335.154 kb on - strand, within BWI76_RS20735 at 4335.331 kb on - strand, within BWI76_RS20735 at 4335.498 kb on + strand at 4335.498 kb on + strand at 4335.710 kb on + strand, within BWI76_RS20740 at 4335.723 kb on - strand, within BWI76_RS20740 at 4335.781 kb on - strand, within BWI76_RS20740 at 4335.938 kb on - strand, within BWI76_RS20740 at 4335.982 kb on + strand, within BWI76_RS20740 at 4336.155 kb on - strand, within BWI76_RS20740 at 4336.544 kb on - strand at 4336.633 kb on - strand, within BWI76_RS20745 at 4336.656 kb on - strand, within BWI76_RS20745 at 4336.663 kb on + strand, within BWI76_RS20745 at 4336.788 kb on - strand, within BWI76_RS20745 at 4336.818 kb on + strand, within BWI76_RS20745 at 4336.935 kb on - strand, within BWI76_RS20745 at 4337.033 kb on - strand, within BWI76_RS20745 at 4337.147 kb on - strand, within BWI76_RS20745 at 4337.148 kb on - strand, within BWI76_RS20745 at 4337.296 kb on + strand, within BWI76_RS20745
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 4,334,572 - BWI76_RS20730 0.80 +0.1 4,334,904 + BWI76_RS20735 0.34 -1.1 4,334,945 - BWI76_RS20735 0.39 -0.7 4,335,154 - BWI76_RS20735 0.63 -0.4 4,335,331 - BWI76_RS20735 0.83 -1.5 4,335,498 + -1.1 4,335,498 + +0.1 4,335,710 + BWI76_RS20740 0.26 -0.4 4,335,723 - BWI76_RS20740 0.27 -1.9 4,335,781 - BWI76_RS20740 0.34 -1.4 4,335,938 - BWI76_RS20740 0.51 -0.5 4,335,982 + BWI76_RS20740 0.56 +0.6 4,336,155 - BWI76_RS20740 0.75 -2.9 4,336,544 - +0.6 4,336,633 - BWI76_RS20745 0.12 -0.0 4,336,656 - BWI76_RS20745 0.14 +0.3 4,336,663 + BWI76_RS20745 0.14 +1.6 4,336,788 - BWI76_RS20745 0.26 +0.2 4,336,818 + BWI76_RS20745 0.29 -0.1 4,336,935 - BWI76_RS20745 0.40 +0.4 4,337,033 - BWI76_RS20745 0.50 +0.2 4,337,147 - BWI76_RS20745 0.60 -0.2 4,337,148 - BWI76_RS20745 0.60 -0.0 4,337,296 + BWI76_RS20745 0.75 +0.3
Or see this region's nucleotide sequence