Experiment: RCH2_defined_glucose_5mM with Serotonin 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000834 and ABIE53_000835 are separated by 159 nucleotides ABIE53_000835 and ABIE53_000836 are separated by 90 nucleotides
ABIE53_000834: ABIE53_000834 - LysR family hydrogen peroxide-inducible transcriptional activator, at 905,608 to 906,567
_000834
ABIE53_000835: ABIE53_000835 - hypothetical protein, at 906,727 to 906,864
_000835
ABIE53_000836: ABIE53_000836 - catalase, at 906,955 to 908,406
_000836
Position (kb) 906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 905.902 kb on + strand, within ABIE53_000834 at 905.902 kb on + strand, within ABIE53_000834 at 905.902 kb on + strand, within ABIE53_000834 at 905.902 kb on + strand, within ABIE53_000834 at 905.902 kb on + strand, within ABIE53_000834 at 905.902 kb on + strand, within ABIE53_000834 at 905.903 kb on - strand, within ABIE53_000834 at 905.903 kb on - strand, within ABIE53_000834 at 905.903 kb on - strand, within ABIE53_000834 at 905.903 kb on - strand, within ABIE53_000834 at 905.903 kb on - strand, within ABIE53_000834 at 905.903 kb on - strand, within ABIE53_000834 at 905.904 kb on + strand, within ABIE53_000834 at 905.904 kb on + strand, within ABIE53_000834 at 905.905 kb on - strand, within ABIE53_000834 at 905.905 kb on - strand, within ABIE53_000834 at 905.905 kb on - strand, within ABIE53_000834 at 905.905 kb on - strand, within ABIE53_000834 at 905.905 kb on - strand, within ABIE53_000834 at 905.918 kb on - strand, within ABIE53_000834 at 905.918 kb on - strand, within ABIE53_000834 at 905.990 kb on - strand, within ABIE53_000834 at 906.312 kb on + strand, within ABIE53_000834 at 906.312 kb on + strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.862 kb on + strand at 906.863 kb on - strand at 906.870 kb on + strand at 906.870 kb on + strand at 906.871 kb on - strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.171 kb on + strand, within ABIE53_000836 at 907.172 kb on - strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.354 kb on - strand, within ABIE53_000836 at 907.408 kb on + strand, within ABIE53_000836 at 907.409 kb on - strand, within ABIE53_000836 at 907.409 kb on - strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.550 kb on - strand, within ABIE53_000836 at 907.550 kb on - strand, within ABIE53_000836 at 907.765 kb on + strand, within ABIE53_000836 at 907.765 kb on + strand, within ABIE53_000836 at 907.813 kb on + strand, within ABIE53_000836 at 907.813 kb on + strand, within ABIE53_000836 at 907.864 kb on + strand, within ABIE53_000836 at 907.864 kb on + strand, within ABIE53_000836
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Serotonin 5 mM remove 905,902 + ABIE53_000834 0.31 -2.3 905,902 + ABIE53_000834 0.31 +0.0 905,902 + ABIE53_000834 0.31 +0.8 905,902 + ABIE53_000834 0.31 -1.4 905,902 + ABIE53_000834 0.31 -2.4 905,902 + ABIE53_000834 0.31 +0.4 905,903 - ABIE53_000834 0.31 +0.2 905,903 - ABIE53_000834 0.31 -0.8 905,903 - ABIE53_000834 0.31 -1.4 905,903 - ABIE53_000834 0.31 +0.8 905,903 - ABIE53_000834 0.31 -0.2 905,903 - ABIE53_000834 0.31 -0.4 905,904 + ABIE53_000834 0.31 -1.3 905,904 + ABIE53_000834 0.31 -2.4 905,905 - ABIE53_000834 0.31 -1.9 905,905 - ABIE53_000834 0.31 -2.1 905,905 - ABIE53_000834 0.31 +0.8 905,905 - ABIE53_000834 0.31 -1.2 905,905 - ABIE53_000834 0.31 -2.1 905,918 - ABIE53_000834 0.32 -1.5 905,918 - ABIE53_000834 0.32 -0.5 905,990 - ABIE53_000834 0.40 +0.8 906,312 + ABIE53_000834 0.73 -1.7 906,312 + ABIE53_000834 0.73 +0.5 906,313 - ABIE53_000834 0.73 -3.3 906,313 - ABIE53_000834 0.73 -0.5 906,313 - ABIE53_000834 0.73 -1.4 906,409 + ABIE53_000834 0.83 -0.9 906,409 + ABIE53_000834 0.83 -1.5 906,409 + ABIE53_000834 0.83 -0.2 906,410 - ABIE53_000834 0.84 -0.8 906,410 - ABIE53_000834 0.84 -3.1 906,410 - ABIE53_000834 0.84 -0.8 906,693 + +0.2 906,693 + -0.4 906,693 + -0.7 906,693 + -1.0 906,693 + +0.5 906,693 + -1.6 906,693 + -1.0 906,693 + +0.5 906,693 + -0.1 906,693 + -1.0 906,693 + -1.5 906,694 - +0.1 906,694 - +0.1 906,694 - +1.4 906,694 - -0.8 906,694 - -0.4 906,694 - +0.2 906,694 - +0.2 906,694 - -0.1 906,862 + +0.5 906,863 - +0.7 906,870 + +1.0 906,870 + -0.2 906,871 - -1.8 907,055 + -0.2 907,055 + +1.0 907,055 + +0.1 907,055 + +0.5 907,055 + -0.2 907,055 + -0.1 907,055 + +1.8 907,055 + -0.6 907,055 + -0.8 907,055 + -0.3 907,055 + -0.7 907,055 + +1.2 907,055 + -0.5 907,055 + -0.3 907,056 - -0.6 907,056 - +2.5 907,056 - -0.5 907,056 - -0.5 907,056 - -1.7 907,056 - -0.3 907,056 - -0.8 907,056 - -0.4 907,056 - -1.9 907,056 - -1.1 907,056 - -1.1 907,056 - -1.2 907,056 - +1.8 907,056 - +1.3 907,171 + ABIE53_000836 0.15 +3.8 907,172 - ABIE53_000836 0.15 +1.2 907,300 + ABIE53_000836 0.24 +1.4 907,300 + ABIE53_000836 0.24 -0.1 907,300 + ABIE53_000836 0.24 -1.5 907,300 + ABIE53_000836 0.24 -1.5 907,301 - ABIE53_000836 0.24 +0.1 907,301 - ABIE53_000836 0.24 -1.0 907,301 - ABIE53_000836 0.24 +0.8 907,301 - ABIE53_000836 0.24 +0.3 907,354 - ABIE53_000836 0.27 -0.7 907,408 + ABIE53_000836 0.31 +0.8 907,409 - ABIE53_000836 0.31 -0.5 907,409 - ABIE53_000836 0.31 +1.2 907,516 + ABIE53_000836 0.39 +0.9 907,516 + ABIE53_000836 0.39 -0.2 907,516 + ABIE53_000836 0.39 -0.5 907,516 + ABIE53_000836 0.39 +1.8 907,516 + ABIE53_000836 0.39 -0.3 907,516 + ABIE53_000836 0.39 -1.3 907,516 + ABIE53_000836 0.39 -0.9 907,517 - ABIE53_000836 0.39 -2.9 907,517 - ABIE53_000836 0.39 +1.4 907,517 - ABIE53_000836 0.39 -0.2 907,517 - ABIE53_000836 0.39 +0.8 907,517 - ABIE53_000836 0.39 +2.0 907,549 + ABIE53_000836 0.41 +2.1 907,549 + ABIE53_000836 0.41 -0.3 907,549 + ABIE53_000836 0.41 -0.4 907,549 + ABIE53_000836 0.41 +0.2 907,549 + ABIE53_000836 0.41 +0.3 907,550 - ABIE53_000836 0.41 +1.8 907,550 - ABIE53_000836 0.41 -0.4 907,765 + ABIE53_000836 0.56 -1.0 907,765 + ABIE53_000836 0.56 -1.4 907,813 + ABIE53_000836 0.59 -0.3 907,813 + ABIE53_000836 0.59 -1.0 907,864 + ABIE53_000836 0.63 +0.2 907,864 + ABIE53_000836 0.63 -0.2
Or see this region's nucleotide sequence