Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00370

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS00360 and HSERO_RS00365 are separated by 170 nucleotidesHSERO_RS00365 and HSERO_RS00370 are separated by 134 nucleotidesHSERO_RS00370 and HSERO_RS00375 are separated by 39 nucleotidesHSERO_RS00375 and HSERO_RS00380 are separated by 17 nucleotides HSERO_RS00360: HSERO_RS00360 - hypothetical protein, at 86,691 to 87,035 _RS00360 HSERO_RS00365: HSERO_RS00365 - membrane protein, at 87,206 to 87,751 _RS00365 HSERO_RS00370: HSERO_RS00370 - peptide transporter, at 87,886 to 89,892 _RS00370 HSERO_RS00375: HSERO_RS00375 - phosphatidate cytidylyltransferase, at 89,932 to 90,873 _RS00375 HSERO_RS00380: HSERO_RS00380 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 90,891 to 91,508 _RS00380 Position (kb) 87 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.083 kb on + strandat 87.083 kb on + strandat 87.091 kb on - strandat 87.422 kb on - strand, within HSERO_RS00365at 87.494 kb on - strand, within HSERO_RS00365at 87.494 kb on - strand, within HSERO_RS00365at 87.657 kb on + strand, within HSERO_RS00365at 87.723 kb on + strandat 87.753 kb on + strandat 87.753 kb on + strandat 87.753 kb on + strandat 87.889 kb on - strandat 87.924 kb on - strandat 87.944 kb on - strandat 88.006 kb on + strandat 88.014 kb on - strandat 88.190 kb on + strand, within HSERO_RS00370at 88.259 kb on - strand, within HSERO_RS00370at 88.565 kb on + strand, within HSERO_RS00370at 88.575 kb on + strand, within HSERO_RS00370at 88.578 kb on - strand, within HSERO_RS00370at 88.583 kb on - strand, within HSERO_RS00370at 88.741 kb on + strand, within HSERO_RS00370at 88.796 kb on + strand, within HSERO_RS00370at 88.799 kb on - strand, within HSERO_RS00370at 88.813 kb on - strand, within HSERO_RS00370at 88.883 kb on + strand, within HSERO_RS00370at 88.932 kb on + strand, within HSERO_RS00370at 88.940 kb on + strand, within HSERO_RS00370at 89.308 kb on + strand, within HSERO_RS00370at 89.313 kb on + strand, within HSERO_RS00370at 89.365 kb on + strand, within HSERO_RS00370at 89.378 kb on - strand, within HSERO_RS00370at 89.547 kb on + strand, within HSERO_RS00370at 89.594 kb on - strand, within HSERO_RS00370at 89.594 kb on - strand, within HSERO_RS00370at 89.594 kb on - strand, within HSERO_RS00370at 89.607 kb on - strand, within HSERO_RS00370at 89.607 kb on - strand, within HSERO_RS00370at 89.705 kb on + strandat 89.743 kb on + strandat 89.840 kb on + strandat 89.905 kb on + strandat 89.984 kb on - strandat 89.999 kb on + strandat 90.192 kb on - strandat 90.192 kb on - strand, within HSERO_RS00375at 90.317 kb on - strand, within HSERO_RS00375at 90.499 kb on - strand, within HSERO_RS00375at 90.583 kb on - strand, within HSERO_RS00375at 90.614 kb on - strand, within HSERO_RS00375at 90.867 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
87,083 + -0.0
87,083 + -0.0
87,091 - -0.4
87,422 - HSERO_RS00365 0.40 +0.7
87,494 - HSERO_RS00365 0.53 -0.3
87,494 - HSERO_RS00365 0.53 -0.4
87,657 + HSERO_RS00365 0.83 -1.9
87,723 + -0.3
87,753 + +2.0
87,753 + +1.2
87,753 + -0.0
87,889 - -0.7
87,924 - -0.8
87,944 - -0.3
88,006 + -0.7
88,014 - -1.3
88,190 + HSERO_RS00370 0.15 -1.8
88,259 - HSERO_RS00370 0.19 -0.7
88,565 + HSERO_RS00370 0.34 -2.5
88,575 + HSERO_RS00370 0.34 -0.8
88,578 - HSERO_RS00370 0.34 -0.3
88,583 - HSERO_RS00370 0.35 -0.4
88,741 + HSERO_RS00370 0.43 -0.7
88,796 + HSERO_RS00370 0.45 -1.8
88,799 - HSERO_RS00370 0.45 +0.2
88,813 - HSERO_RS00370 0.46 +1.1
88,883 + HSERO_RS00370 0.50 -0.6
88,932 + HSERO_RS00370 0.52 -1.1
88,940 + HSERO_RS00370 0.53 -0.4
89,308 + HSERO_RS00370 0.71 -0.8
89,313 + HSERO_RS00370 0.71 -1.3
89,365 + HSERO_RS00370 0.74 -0.2
89,378 - HSERO_RS00370 0.74 +0.3
89,547 + HSERO_RS00370 0.83 -0.6
89,594 - HSERO_RS00370 0.85 -1.7
89,594 - HSERO_RS00370 0.85 -3.4
89,594 - HSERO_RS00370 0.85 -1.4
89,607 - HSERO_RS00370 0.86 -2.1
89,607 - HSERO_RS00370 0.86 +0.2
89,705 + +1.3
89,743 + -0.5
89,840 + -2.3
89,905 + +0.5
89,984 - +0.0
89,999 + -1.8
90,192 - +1.2
90,192 - HSERO_RS00375 0.28 +0.1
90,317 - HSERO_RS00375 0.41 +0.1
90,499 - HSERO_RS00375 0.60 +0.5
90,583 - HSERO_RS00375 0.69 +1.2
90,614 - HSERO_RS00375 0.72 -0.3
90,867 - +0.1

Or see this region's nucleotide sequence