Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003433

Experiment: RCH2_defined_glucose_5mM with Serotonin 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Serotonin 5 mM
3,860,559	+				+0.3
3,860,559	+				-0.5
3,860,559	+				+0.3
3,860,559	+				-0.1
3,860,559	+				-0.7
3,860,559	+				+0.1
3,860,559	+				-1.1
3,860,559	+				+0.6
3,860,559	+				-0.6
3,860,559	+				-2.2
3,860,559	+				-0.3
3,860,559	+				+1.8
3,860,559	+				-1.6
3,860,559	+				+1.0
3,860,559	+				-0.2
3,860,559	+				+0.3
3,860,559	+				+0.1
3,860,559	+				-0.4
3,860,559	+				+0.8
3,860,559	+				-1.3
3,860,559	+				-0.3
3,860,559	+				-0.7
3,860,559	+				-0.4
3,860,559	+				+0.7
3,860,559	+				-0.5
3,860,560	-				-2.7
3,860,560	-				-2.5
3,860,560	-				+0.3
3,860,560	-				-2.3
3,860,560	-				-2.1
3,860,560	-				-2.7
3,860,560	-				-2.4
3,860,560	-				-5.3
3,860,560	-				+0.8
3,860,560	-				-1.7
3,860,560	-				-2.4
3,860,560	-				+0.3
3,860,560	-				-2.4
3,860,560	-				-3.0
3,860,560	-				-1.3
3,860,560	-				-2.4
3,860,560	-				-2.1
3,860,560	-				-2.5
3,860,560	-				-2.5
3,860,560	-				-3.0
3,860,560	-				+0.6
3,860,560	-				-2.4
3,860,560	-				-0.4
3,860,560	-				-2.9
3,860,560	-				-1.0
3,860,560	-				-4.7
3,860,657	-		ABIE53_003432	0.10	-3.5
3,860,657	-		ABIE53_003432	0.10	-2.6
3,860,657	-		ABIE53_003432	0.10	-3.1
3,860,689	+		ABIE53_003432	0.14	+2.8
3,860,689	+		ABIE53_003432	0.14	+0.0
3,860,689	+		ABIE53_003432	0.14	+1.3
3,860,689	+		ABIE53_003432	0.14	+1.3
3,860,689	+		ABIE53_003432	0.14	+0.1
3,860,689	+		ABIE53_003432	0.14	-1.2
3,860,690	-		ABIE53_003432	0.14	+1.1
3,860,690	-		ABIE53_003432	0.14	-1.9
3,860,690	-		ABIE53_003432	0.14	-1.8
3,860,690	-		ABIE53_003432	0.14	-3.5
3,860,691	+		ABIE53_003432	0.14	-1.7
3,860,691	+		ABIE53_003432	0.14	-1.5
3,860,691	+		ABIE53_003432	0.14	+0.4
3,860,691	+		ABIE53_003432	0.14	+0.6
3,860,692	-		ABIE53_003432	0.14	-2.7
3,860,692	-		ABIE53_003432	0.14	-2.4
3,860,692	-		ABIE53_003432	0.14	-4.1
3,860,692	-		ABIE53_003432	0.14	-0.2
3,860,692	-		ABIE53_003432	0.14	-2.5
3,860,692	-		ABIE53_003432	0.14	-1.3
3,860,692	-		ABIE53_003432	0.14	-2.7
3,860,692	-		ABIE53_003432	0.14	-1.6
3,860,692	-		ABIE53_003432	0.14	-3.5
3,860,692	-		ABIE53_003432	0.14	-1.2
3,860,692	-		ABIE53_003432	0.14	-2.0
3,860,692	-		ABIE53_003432	0.14	-1.0
3,860,851	+		ABIE53_003432	0.31	-0.9
3,860,851	+		ABIE53_003432	0.31	-0.9
3,860,851	+		ABIE53_003432	0.31	-0.3
3,860,851	+		ABIE53_003432	0.31	-1.2
3,860,851	+		ABIE53_003432	0.31	+0.8
3,860,851	+		ABIE53_003432	0.31	-0.7
3,860,851	+		ABIE53_003432	0.31	-0.5
3,860,851	+		ABIE53_003432	0.31	-0.2
3,860,852	-		ABIE53_003432	0.32	-2.0
3,860,852	-		ABIE53_003432	0.32	-1.2
3,860,852	-		ABIE53_003432	0.32	-0.5
3,860,852	-		ABIE53_003432	0.32	-0.5
3,860,852	-		ABIE53_003432	0.32	-2.8
3,860,910	+		ABIE53_003432	0.38	+0.3
3,860,910	+		ABIE53_003432	0.38	+1.4
3,860,910	+		ABIE53_003432	0.38	-0.7
3,860,910	+		ABIE53_003432	0.38	-0.2
3,860,910	+		ABIE53_003432	0.38	-0.2
3,860,910	+		ABIE53_003432	0.38	-0.9
3,860,910	+		ABIE53_003432	0.38	-0.3
3,860,910	+		ABIE53_003432	0.38	-1.7
3,860,910	+		ABIE53_003432	0.38	+0.6
3,860,910	+		ABIE53_003432	0.38	-0.3
3,860,910	+		ABIE53_003432	0.38	-1.3
3,860,911	-		ABIE53_003432	0.38	+0.8
3,860,911	-		ABIE53_003432	0.38	+0.3
3,860,911	-		ABIE53_003432	0.38	-0.2
3,860,911	-		ABIE53_003432	0.38	-2.1
3,860,911	-		ABIE53_003432	0.38	+1.8
3,860,950	+		ABIE53_003432	0.42	-1.3
3,860,950	+		ABIE53_003432	0.42	+1.2
3,860,950	+		ABIE53_003432	0.42	+0.3
3,860,950	+		ABIE53_003432	0.42	-0.9
3,860,950	+		ABIE53_003432	0.42	-0.4
3,860,950	+		ABIE53_003432	0.42	+0.5
3,860,951	-		ABIE53_003432	0.42	-1.5
3,860,951	-		ABIE53_003432	0.42	-1.6
3,860,951	-		ABIE53_003432	0.42	-0.6
3,861,055	+		ABIE53_003432	0.54	-1.0
3,861,055	+		ABIE53_003432	0.54	+0.0
3,861,055	+		ABIE53_003432	0.54	-0.1
3,861,056	-		ABIE53_003432	0.54	-1.2
3,861,056	-		ABIE53_003432	0.54	+0.3
3,861,056	-		ABIE53_003432	0.54	-0.4
3,861,056	-		ABIE53_003432	0.54	-1.2
3,861,056	-		ABIE53_003432	0.54	-3.6
3,861,056	-		ABIE53_003432	0.54	-0.3
3,861,056	-		ABIE53_003432	0.54	-2.5
3,861,133	+		ABIE53_003432	0.62	-0.4
3,861,133	+		ABIE53_003432	0.62	-0.5
3,861,133	+		ABIE53_003432	0.62	-0.2
3,861,134	-		ABIE53_003432	0.62	-1.0
3,861,134	-		ABIE53_003432	0.62	-0.7
3,861,134	-		ABIE53_003432	0.62	-1.5
3,861,187	+		ABIE53_003432	0.68	+0.5
3,861,187	+		ABIE53_003432	0.68	+3.7
3,861,187	+		ABIE53_003432	0.68	-0.1
3,861,187	+		ABIE53_003432	0.68	+1.0
3,861,187	+		ABIE53_003432	0.68	+2.3
3,861,187	+		ABIE53_003432	0.68	+0.5
3,861,187	+		ABIE53_003432	0.68	-0.0
3,861,187	+		ABIE53_003432	0.68	-3.4
3,861,188	-		ABIE53_003432	0.68	-0.5
3,861,188	-		ABIE53_003432	0.68	-2.1
3,861,188	-		ABIE53_003432	0.68	-1.8
3,861,188	-		ABIE53_003432	0.68	-2.0
3,861,188	-		ABIE53_003432	0.68	-0.7
3,861,301	+		ABIE53_003432	0.80	+1.4
3,861,301	+		ABIE53_003432	0.80	-1.2
3,861,302	-		ABIE53_003432	0.80	-1.7
3,861,302	-		ABIE53_003432	0.80	+0.1
3,861,302	-		ABIE53_003432	0.80	-1.3
3,861,302	-		ABIE53_003432	0.80	-1.3
3,861,366	+		ABIE53_003432	0.87	-0.1
3,861,457	+				-2.6
3,861,457	+				+0.5
3,861,457	+				-0.3
3,861,457	+				+1.3
3,861,457	+				-0.7
3,861,457	+				-0.1
3,861,457	+				+0.3
3,861,457	+				-1.1
3,861,457	+				-0.5
3,861,457	+				-0.8
3,861,457	+				+0.8
3,861,457	+				+1.2
3,861,458	-				-2.5
3,861,458	-				-1.5
3,861,458	-				-1.5
3,861,458	-				-1.5
3,861,458	-				-3.5
3,861,458	-				+0.8
3,861,458	-				-0.3
3,861,458	-				-3.2
3,861,481	+				-1.3
3,861,481	+				-0.3
3,861,481	+				+0.1
3,861,482	-				-1.3
3,861,482	-				-1.3
3,861,511	+				-0.9
3,861,511	+				-0.2
3,861,511	+				-1.5
3,861,511	+				+1.1
3,861,511	+				-1.8
3,861,511	+				+2.7
3,861,511	+				+1.8
3,861,511	+				-0.3
3,861,511	+				+1.6
3,861,511	+				-2.3
3,861,511	+				-1.2
3,861,511	+				-0.2
3,861,511	+				-0.2
3,861,511	+				-0.3
3,861,511	+				-0.2
3,861,511	+				-0.6
3,861,511	+				+0.3
3,861,511	+				-1.2
3,861,511	+				+1.1
3,861,511	+				-1.9
3,861,511	+				-0.6
3,861,511	+				-1.9
3,861,511	+				+0.0
3,861,511	+				+1.3
3,861,511	+				-0.5
3,861,511	+				-1.0
3,861,512	-				-2.3
3,861,512	-				-2.6
3,861,512	-				+0.1
3,861,512	-				+0.8
3,861,512	-				-0.7
3,861,512	-				-1.5
3,861,512	-				-4.0
3,861,512	-				-1.2
3,861,512	-				-1.9
3,861,512	-				-1.1
3,861,512	-				-0.5
3,861,512	-				-1.2
3,861,512	-				-1.7
3,861,512	-				-2.4
3,861,512	-				-3.5
3,861,512	-				-1.9
3,861,512	-				+0.8
3,861,512	-				-1.2
3,861,512	-				-1.7
3,861,512	-				-0.8
3,861,512	-				-1.7
3,861,512	-				-2.2
3,861,536	+				-0.0
3,861,536	+				-1.2
3,861,585	+		ABIE53_003433	0.29	-2.2
3,861,585	+		ABIE53_003433	0.29	+1.3
3,861,635	+		ABIE53_003433	0.55	-0.6
3,861,636	-		ABIE53_003433	0.55	-1.7
3,861,636	-		ABIE53_003433	0.55	-3.7
3,861,669	+		ABIE53_003433	0.72	-1.1
3,861,669	+		ABIE53_003433	0.72	+1.1
3,861,669	+		ABIE53_003433	0.72	+0.8
3,861,670	-		ABIE53_003433	0.73	-3.5
3,861,670	-		ABIE53_003433	0.73	-1.3
3,861,670	-		ABIE53_003433	0.73	-0.4
3,861,670	-		ABIE53_003433	0.73	-2.5
3,861,670	-		ABIE53_003433	0.73	-0.5
3,861,684	+		ABIE53_003433	0.80	-0.5
3,861,684	+		ABIE53_003433	0.80	+0.2
3,861,684	+		ABIE53_003433	0.80	-0.0
3,861,684	+		ABIE53_003433	0.80	-0.3
3,861,685	-		ABIE53_003433	0.81	-2.2
3,861,685	-		ABIE53_003433	0.81	-1.3
3,861,685	-		ABIE53_003433	0.81	+0.3
3,861,685	-		ABIE53_003433	0.81	-2.2
3,861,819	+				-0.2
3,861,820	-				-0.2
3,861,820	-				+0.8
3,861,820	-				-2.9
3,861,820	-				-2.9
3,861,820	-				-4.0
3,861,829	+				-0.1
3,861,830	-				-2.5
3,862,056	-		ABIE53_003434	0.16	+0.3
3,862,145	+		ABIE53_003434	0.25	-3.6
3,862,145	+		ABIE53_003434	0.25	-0.7
3,862,145	+		ABIE53_003434	0.25	-3.0
3,862,145	+		ABIE53_003434	0.25	-2.4
3,862,145	+		ABIE53_003434	0.25	-4.5
3,862,145	+		ABIE53_003434	0.25	-0.1
3,862,145	+		ABIE53_003434	0.25	-4.3
3,862,145	+		ABIE53_003434	0.25	-4.0
3,862,146	-		ABIE53_003434	0.25	-3.1
3,862,146	-		ABIE53_003434	0.25	-2.1
3,862,146	-		ABIE53_003434	0.25	-2.9
3,862,146	-		ABIE53_003434	0.25	-1.3
3,862,146	-		ABIE53_003434	0.25	-4.8
3,862,214	+		ABIE53_003434	0.32	-0.7
3,862,217	-		ABIE53_003434	0.32	+0.3
3,862,298	+		ABIE53_003434	0.40	-3.8
3,862,299	-		ABIE53_003434	0.40	-3.0
3,862,299	-		ABIE53_003434	0.40	+0.0
3,862,451	+		ABIE53_003434	0.55	-1.7
3,862,452	-		ABIE53_003434	0.55	-2.0
3,862,524	-		ABIE53_003434	0.62	-3.6