Experiment: RCH2_defined_glucose_5mM with Serotonin 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000787 and ABIE53_000788 are separated by 123 nucleotides ABIE53_000788 and ABIE53_000789 are separated by 178 nucleotides
ABIE53_000787: ABIE53_000787 - FdhD protein, at 852,499 to 853,326
_000787
ABIE53_000788: ABIE53_000788 - hypothetical protein, at 853,450 to 853,926
_000788
ABIE53_000789: ABIE53_000789 - PAS domain S-box-containing protein, at 854,105 to 856,435
_000789
Position (kb) 853
854 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 852.518 kb on + strand at 852.518 kb on + strand at 852.518 kb on + strand at 852.519 kb on - strand at 852.519 kb on - strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.528 kb on - strand at 852.528 kb on - strand at 852.659 kb on + strand, within ABIE53_000787 at 852.659 kb on + strand, within ABIE53_000787 at 852.659 kb on + strand, within ABIE53_000787 at 852.659 kb on + strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.396 kb on + strand at 853.396 kb on + strand at 853.397 kb on - strand at 853.397 kb on - strand at 853.397 kb on - strand at 853.397 kb on - strand at 853.401 kb on + strand at 853.401 kb on + strand at 853.401 kb on + strand at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.844 kb on - strand, within ABIE53_000788 at 854.024 kb on - strand at 854.024 kb on - strand at 854.142 kb on + strand at 854.142 kb on + strand at 854.142 kb on + strand at 854.142 kb on + strand at 854.143 kb on - strand at 854.143 kb on - strand at 854.143 kb on - strand at 854.143 kb on - strand at 854.537 kb on + strand, within ABIE53_000789 at 854.537 kb on + strand, within ABIE53_000789 at 854.537 kb on + strand, within ABIE53_000789 at 854.537 kb on + strand, within ABIE53_000789 at 854.538 kb on - strand, within ABIE53_000789 at 854.538 kb on - strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.821 kb on + strand, within ABIE53_000789 at 854.821 kb on + strand, within ABIE53_000789 at 854.821 kb on + strand, within ABIE53_000789 at 854.822 kb on - strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.880 kb on - strand, within ABIE53_000789 at 854.880 kb on - strand, within ABIE53_000789 at 854.880 kb on - strand, within ABIE53_000789 at 854.886 kb on - strand, within ABIE53_000789
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Serotonin 5 mM remove 852,518 + -0.5 852,518 + -0.4 852,518 + -0.2 852,519 - -0.1 852,519 - +3.4 852,527 + -1.0 852,527 + +1.1 852,527 + -0.2 852,527 + -0.3 852,527 + +0.4 852,527 + +0.2 852,528 - +0.5 852,528 - -0.5 852,659 + ABIE53_000787 0.19 -1.0 852,659 + ABIE53_000787 0.19 -0.3 852,659 + ABIE53_000787 0.19 -0.2 852,659 + ABIE53_000787 0.19 -0.2 852,660 - ABIE53_000787 0.19 +1.4 852,660 - ABIE53_000787 0.19 -1.0 852,660 - ABIE53_000787 0.19 +1.8 852,660 - ABIE53_000787 0.19 -1.0 852,660 - ABIE53_000787 0.19 -0.0 852,660 - ABIE53_000787 0.19 -0.9 852,660 - ABIE53_000787 0.19 +0.8 852,660 - ABIE53_000787 0.19 -1.2 852,660 - ABIE53_000787 0.19 -0.2 852,660 - ABIE53_000787 0.19 -1.3 852,660 - ABIE53_000787 0.19 +0.2 853,388 + -0.4 853,388 + -0.2 853,388 + +1.8 853,388 + -1.5 853,388 + +1.8 853,388 + +0.1 853,389 - -0.5 853,389 - +0.4 853,389 - -0.3 853,389 - +2.4 853,389 - -1.0 853,389 - -0.2 853,389 - +0.0 853,389 - +0.8 853,396 + -0.2 853,396 + -0.2 853,397 - -0.1 853,397 - -2.2 853,397 - -0.5 853,397 - -1.0 853,401 + +1.8 853,401 + -0.8 853,401 + +2.4 853,513 + ABIE53_000788 0.13 -1.5 853,513 + ABIE53_000788 0.13 +2.4 853,513 + ABIE53_000788 0.13 +0.8 853,513 + ABIE53_000788 0.13 -0.6 853,513 + ABIE53_000788 0.13 +0.4 853,513 + ABIE53_000788 0.13 -0.0 853,513 + ABIE53_000788 0.13 +0.2 853,513 + ABIE53_000788 0.13 +0.1 853,513 + ABIE53_000788 0.13 +0.3 853,514 - ABIE53_000788 0.13 +0.4 853,514 - ABIE53_000788 0.13 +2.3 853,514 - ABIE53_000788 0.13 +2.7 853,514 - ABIE53_000788 0.13 +0.8 853,514 - ABIE53_000788 0.13 -0.2 853,514 - ABIE53_000788 0.13 +1.8 853,514 - ABIE53_000788 0.13 +0.2 853,844 - ABIE53_000788 0.83 +0.0 854,024 - -0.4 854,024 - -1.6 854,142 + -0.3 854,142 + -0.3 854,142 + +0.7 854,142 + -1.9 854,143 - +1.4 854,143 - +0.8 854,143 - -0.3 854,143 - -2.6 854,537 + ABIE53_000789 0.19 +0.2 854,537 + ABIE53_000789 0.19 -0.2 854,537 + ABIE53_000789 0.19 -0.2 854,537 + ABIE53_000789 0.19 -0.4 854,538 - ABIE53_000789 0.19 -0.3 854,538 - ABIE53_000789 0.19 -0.5 854,819 + ABIE53_000789 0.31 -0.8 854,819 + ABIE53_000789 0.31 +0.2 854,819 + ABIE53_000789 0.31 -0.2 854,819 + ABIE53_000789 0.31 +0.1 854,819 + ABIE53_000789 0.31 -0.4 854,819 + ABIE53_000789 0.31 -0.2 854,819 + ABIE53_000789 0.31 +0.2 854,819 + ABIE53_000789 0.31 +0.5 854,819 + ABIE53_000789 0.31 +0.9 854,819 + ABIE53_000789 0.31 -0.2 854,819 + ABIE53_000789 0.31 -1.2 854,819 + ABIE53_000789 0.31 +0.2 854,820 - ABIE53_000789 0.31 -1.3 854,820 - ABIE53_000789 0.31 +0.9 854,820 - ABIE53_000789 0.31 +3.8 854,820 - ABIE53_000789 0.31 -0.3 854,820 - ABIE53_000789 0.31 -0.9 854,820 - ABIE53_000789 0.31 -1.8 854,820 - ABIE53_000789 0.31 -0.8 854,820 - ABIE53_000789 0.31 +1.8 854,820 - ABIE53_000789 0.31 -0.9 854,820 - ABIE53_000789 0.31 +0.0 854,820 - ABIE53_000789 0.31 -0.5 854,820 - ABIE53_000789 0.31 +0.1 854,820 - ABIE53_000789 0.31 -1.2 854,820 - ABIE53_000789 0.31 -0.2 854,821 + ABIE53_000789 0.31 -0.2 854,821 + ABIE53_000789 0.31 +0.2 854,821 + ABIE53_000789 0.31 +1.2 854,822 - ABIE53_000789 0.31 -0.0 854,879 + ABIE53_000789 0.33 +0.1 854,879 + ABIE53_000789 0.33 +0.1 854,879 + ABIE53_000789 0.33 -0.0 854,879 + ABIE53_000789 0.33 +0.8 854,879 + ABIE53_000789 0.33 -0.8 854,879 + ABIE53_000789 0.33 -1.3 854,880 - ABIE53_000789 0.33 +0.1 854,880 - ABIE53_000789 0.33 -0.6 854,880 - ABIE53_000789 0.33 -0.5 854,886 - ABIE53_000789 0.34 +1.6
Or see this region's nucleotide sequence