Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17560 and BWI76_RS17565 are separated by 64 nucleotides BWI76_RS17565 and BWI76_RS17570 are separated by 65 nucleotides BWI76_RS17570 and BWI76_RS17575 are separated by 12 nucleotides
BWI76_RS17560: BWI76_RS17560 - formate dehydrogenase subunit alpha, at 3,645,275 to 3,647,422
_RS17560
BWI76_RS17565: BWI76_RS17565 - hypothetical protein, at 3,647,487 to 3,648,092
_RS17565
BWI76_RS17570: BWI76_RS17570 - iron-sulfur-binding protein, at 3,648,158 to 3,648,616
_RS17570
BWI76_RS17575: BWI76_RS17575 - hypothetical protein, at 3,648,629 to 3,651,841
_RS17575
Position (kb)
3647
3648
3649 Strain fitness (log2 ratio)
-1
0
1 at 3646.633 kb on + strand, within BWI76_RS17560 at 3647.106 kb on + strand, within BWI76_RS17560 at 3647.446 kb on + strand at 3647.446 kb on + strand at 3647.446 kb on + strand at 3647.446 kb on + strand at 3647.447 kb on - strand at 3647.571 kb on - strand, within BWI76_RS17565 at 3647.834 kb on + strand, within BWI76_RS17565 at 3648.411 kb on - strand, within BWI76_RS17570 at 3648.498 kb on - strand, within BWI76_RS17570 at 3648.905 kb on + strand at 3648.928 kb on - strand at 3649.014 kb on + strand, within BWI76_RS17575 at 3649.090 kb on + strand, within BWI76_RS17575
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL remove 3,646,633 + BWI76_RS17560 0.63 +0.7 3,647,106 + BWI76_RS17560 0.85 +0.7 3,647,446 + -0.3 3,647,446 + +0.5 3,647,446 + -0.1 3,647,446 + -0.4 3,647,447 - +0.3 3,647,571 - BWI76_RS17565 0.14 -0.8 3,647,834 + BWI76_RS17565 0.57 -0.9 3,648,411 - BWI76_RS17570 0.55 -0.6 3,648,498 - BWI76_RS17570 0.74 +0.5 3,648,905 + -0.5 3,648,928 - -0.2 3,649,014 + BWI76_RS17575 0.12 -1.4 3,649,090 + BWI76_RS17575 0.14 -0.2
Or see this region's nucleotide sequence