Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004297

Experiment: RCH2_defined_glucose_5mM with Lumichrome 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004296 and ABIE53_004297 are separated by 172 nucleotidesABIE53_004297 and ABIE53_004298 are separated by 267 nucleotides ABIE53_004296: ABIE53_004296 - threonine dehydratase, at 472,818 to 473,825 _004296 ABIE53_004297: ABIE53_004297 - DNA-binding transcriptional MocR family regulator, at 473,998 to 475,401 _004297 ABIE53_004298: ABIE53_004298 - polar amino acid transport system substrate-binding protein, at 475,669 to 476,523 _004298 Position (kb) 473 474 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 473.014 kb on + strand, within ABIE53_004296at 473.014 kb on + strand, within ABIE53_004296at 473.093 kb on - strand, within ABIE53_004296at 473.096 kb on + strand, within ABIE53_004296at 473.097 kb on - strand, within ABIE53_004296at 473.307 kb on - strand, within ABIE53_004296at 473.395 kb on + strand, within ABIE53_004296at 473.395 kb on + strand, within ABIE53_004296at 473.395 kb on + strand, within ABIE53_004296at 473.395 kb on + strand, within ABIE53_004296at 473.395 kb on + strand, within ABIE53_004296at 473.396 kb on - strand, within ABIE53_004296at 473.396 kb on - strand, within ABIE53_004296at 473.500 kb on - strand, within ABIE53_004296at 473.794 kb on + strandat 473.931 kb on - strandat 473.931 kb on - strandat 473.931 kb on - strandat 473.931 kb on - strandat 473.931 kb on - strandat 473.931 kb on - strandat 473.960 kb on + strandat 473.960 kb on + strandat 473.999 kb on + strandat 474.000 kb on - strandat 474.000 kb on - strandat 474.065 kb on + strandat 474.065 kb on + strandat 474.065 kb on + strandat 474.066 kb on - strandat 474.066 kb on - strandat 474.066 kb on - strandat 474.069 kb on + strandat 474.070 kb on - strandat 474.070 kb on - strandat 474.070 kb on - strandat 474.260 kb on + strand, within ABIE53_004297at 474.261 kb on - strand, within ABIE53_004297at 474.397 kb on - strand, within ABIE53_004297at 474.500 kb on + strand, within ABIE53_004297at 474.584 kb on + strand, within ABIE53_004297at 474.584 kb on + strand, within ABIE53_004297at 474.585 kb on - strand, within ABIE53_004297at 474.737 kb on + strand, within ABIE53_004297at 474.737 kb on + strand, within ABIE53_004297at 474.900 kb on + strand, within ABIE53_004297at 475.063 kb on - strand, within ABIE53_004297at 475.121 kb on + strand, within ABIE53_004297at 475.121 kb on + strand, within ABIE53_004297at 475.122 kb on - strand, within ABIE53_004297at 475.122 kb on - strand, within ABIE53_004297at 475.122 kb on - strand, within ABIE53_004297at 475.211 kb on + strand, within ABIE53_004297at 475.306 kb on + strandat 475.307 kb on - strandat 475.307 kb on - strandat 475.307 kb on - strandat 475.307 kb on - strandat 475.307 kb on - strandat 475.440 kb on - strandat 475.462 kb on - strandat 475.462 kb on - strandat 475.462 kb on - strandat 475.484 kb on + strandat 475.484 kb on + strandat 475.485 kb on - strandat 475.485 kb on - strandat 475.487 kb on - strandat 475.505 kb on - strandat 475.519 kb on + strandat 475.519 kb on + strandat 475.519 kb on + strandat 475.520 kb on - strandat 475.546 kb on + strandat 475.547 kb on - strandat 475.554 kb on + strandat 475.584 kb on + strandat 475.584 kb on + strandat 475.584 kb on + strandat 475.585 kb on - strandat 475.585 kb on - strandat 475.585 kb on - strandat 475.585 kb on - strandat 475.627 kb on + strandat 475.653 kb on + strandat 475.653 kb on + strandat 475.653 kb on + strandat 475.654 kb on - strandat 475.793 kb on + strand, within ABIE53_004298at 475.793 kb on + strand, within ABIE53_004298at 475.794 kb on - strand, within ABIE53_004298at 475.797 kb on + strand, within ABIE53_004298at 475.828 kb on + strand, within ABIE53_004298at 475.829 kb on - strand, within ABIE53_004298at 475.990 kb on + strand, within ABIE53_004298at 475.990 kb on + strand, within ABIE53_004298at 475.990 kb on + strand, within ABIE53_004298at 475.990 kb on + strand, within ABIE53_004298at 475.990 kb on + strand, within ABIE53_004298at 475.990 kb on + strand, within ABIE53_004298at 475.991 kb on - strand, within ABIE53_004298at 475.991 kb on - strand, within ABIE53_004298at 475.991 kb on - strand, within ABIE53_004298at 476.038 kb on + strand, within ABIE53_004298at 476.091 kb on + strand, within ABIE53_004298at 476.091 kb on + strand, within ABIE53_004298at 476.092 kb on - strand, within ABIE53_004298at 476.092 kb on - strand, within ABIE53_004298at 476.092 kb on - strand, within ABIE53_004298at 476.095 kb on + strand, within ABIE53_004298at 476.095 kb on + strand, within ABIE53_004298at 476.096 kb on - strand, within ABIE53_004298at 476.096 kb on - strand, within ABIE53_004298at 476.096 kb on - strand, within ABIE53_004298at 476.096 kb on - strand, within ABIE53_004298at 476.096 kb on - strand, within ABIE53_004298at 476.096 kb on - strand, within ABIE53_004298

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Lumichrome 5 mM
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473,014 + ABIE53_004296 0.19 +0.4
473,014 + ABIE53_004296 0.19 +0.6
473,093 - ABIE53_004296 0.27 +0.8
473,096 + ABIE53_004296 0.28 +1.3
473,097 - ABIE53_004296 0.28 +0.2
473,307 - ABIE53_004296 0.49 -1.9
473,395 + ABIE53_004296 0.57 +0.8
473,395 + ABIE53_004296 0.57 -1.1
473,395 + ABIE53_004296 0.57 +0.1
473,395 + ABIE53_004296 0.57 +0.3
473,395 + ABIE53_004296 0.57 -0.1
473,396 - ABIE53_004296 0.57 +1.5
473,396 - ABIE53_004296 0.57 +1.0
473,500 - ABIE53_004296 0.68 -0.1
473,794 + +0.1
473,931 - -0.6
473,931 - +0.2
473,931 - +0.4
473,931 - +2.1
473,931 - -2.8
473,931 - -0.3
473,960 + -1.2
473,960 + -0.3
473,999 + -2.7
474,000 - -0.6
474,000 - -0.9
474,065 + +0.1
474,065 + -0.2
474,065 + +2.6
474,066 - +0.2
474,066 - -1.1
474,066 - -0.3
474,069 + +1.8
474,070 - -0.8
474,070 - +1.1
474,070 - +1.5
474,260 + ABIE53_004297 0.19 -0.6
474,261 - ABIE53_004297 0.19 +1.2
474,397 - ABIE53_004297 0.28 -0.4
474,500 + ABIE53_004297 0.36 -0.1
474,584 + ABIE53_004297 0.42 +0.1
474,584 + ABIE53_004297 0.42 +1.2
474,585 - ABIE53_004297 0.42 -0.3
474,737 + ABIE53_004297 0.53 -0.1
474,737 + ABIE53_004297 0.53 -0.1
474,900 + ABIE53_004297 0.64 +0.8
475,063 - ABIE53_004297 0.76 +0.8
475,121 + ABIE53_004297 0.80 -0.6
475,121 + ABIE53_004297 0.80 -0.8
475,122 - ABIE53_004297 0.80 +0.1
475,122 - ABIE53_004297 0.80 -0.2
475,122 - ABIE53_004297 0.80 -0.8
475,211 + ABIE53_004297 0.86 +1.0
475,306 + -2.8
475,307 - +0.8
475,307 - +0.5
475,307 - -0.4
475,307 - +1.8
475,307 - -0.6
475,440 - -0.2
475,462 - +1.4
475,462 - -0.0
475,462 - -0.5
475,484 + -0.0
475,484 + -0.5
475,485 - -1.6
475,485 - +0.2
475,487 - +1.0
475,505 - -1.8
475,519 + -0.4
475,519 + +0.2
475,519 + -0.8
475,520 - -0.3
475,546 + +1.6
475,547 - -1.0
475,554 + -1.7
475,584 + +0.8
475,584 + +1.5
475,584 + +0.6
475,585 - -1.1
475,585 - +1.3
475,585 - +0.4
475,585 - -1.5
475,627 + -0.4
475,653 + +1.3
475,653 + +0.2
475,653 + +0.2
475,654 - -0.8
475,793 + ABIE53_004298 0.15 +0.9
475,793 + ABIE53_004298 0.15 -0.2
475,794 - ABIE53_004298 0.15 -1.2
475,797 + ABIE53_004298 0.15 -0.3
475,828 + ABIE53_004298 0.19 +0.8
475,829 - ABIE53_004298 0.19 -0.4
475,990 + ABIE53_004298 0.38 -0.3
475,990 + ABIE53_004298 0.38 -0.2
475,990 + ABIE53_004298 0.38 -2.5
475,990 + ABIE53_004298 0.38 +1.0
475,990 + ABIE53_004298 0.38 -0.7
475,990 + ABIE53_004298 0.38 -0.1
475,991 - ABIE53_004298 0.38 -1.1
475,991 - ABIE53_004298 0.38 +0.2
475,991 - ABIE53_004298 0.38 +0.2
476,038 + ABIE53_004298 0.43 -0.9
476,091 + ABIE53_004298 0.49 +0.4
476,091 + ABIE53_004298 0.49 +0.6
476,092 - ABIE53_004298 0.49 +0.3
476,092 - ABIE53_004298 0.49 +0.0
476,092 - ABIE53_004298 0.49 -0.2
476,095 + ABIE53_004298 0.50 -0.8
476,095 + ABIE53_004298 0.50 -0.8
476,096 - ABIE53_004298 0.50 -1.0
476,096 - ABIE53_004298 0.50 -0.2
476,096 - ABIE53_004298 0.50 -0.2
476,096 - ABIE53_004298 0.50 -1.4
476,096 - ABIE53_004298 0.50 -1.8
476,096 - ABIE53_004298 0.50 -0.8

Or see this region's nucleotide sequence