Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16995 and BWI76_RS17000 are separated by 2 nucleotides BWI76_RS17000 and BWI76_RS17005 are separated by 442 nucleotides BWI76_RS17005 and BWI76_RS17010 are separated by 11 nucleotides
BWI76_RS16995: BWI76_RS16995 - Fe-S cluster assembly protein SufB, at 3,524,329 to 3,525,816
_RS16995
BWI76_RS17000: BWI76_RS17000 - Fe-S cluster assembly scaffold SufA, at 3,525,819 to 3,526,196
_RS17000
BWI76_RS17005: BWI76_RS17005 - hypothetical protein, at 3,526,639 to 3,527,151
_RS17005
BWI76_RS17010: BWI76_RS17010 - fimbrial protein, at 3,527,163 to 3,528,110
_RS17010
Position (kb)
3525
3526
3527 Strain fitness (log2 ratio)
-1
0
1 at 3524.899 kb on - strand, within BWI76_RS16995 at 3525.230 kb on + strand, within BWI76_RS16995 at 3525.336 kb on - strand, within BWI76_RS16995 at 3525.491 kb on + strand, within BWI76_RS16995 at 3525.532 kb on + strand, within BWI76_RS16995 at 3525.545 kb on - strand, within BWI76_RS16995 at 3525.897 kb on + strand, within BWI76_RS17000 at 3525.998 kb on - strand, within BWI76_RS17000 at 3526.143 kb on - strand, within BWI76_RS17000 at 3526.205 kb on + strand at 3526.459 kb on + strand at 3526.630 kb on - strand at 3526.671 kb on + strand at 3526.854 kb on + strand, within BWI76_RS17005 at 3526.958 kb on + strand, within BWI76_RS17005 at 3526.965 kb on + strand, within BWI76_RS17005 at 3527.044 kb on + strand, within BWI76_RS17005 at 3527.050 kb on + strand, within BWI76_RS17005 at 3527.188 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL remove 3,524,899 - BWI76_RS16995 0.38 +0.4 3,525,230 + BWI76_RS16995 0.61 -0.9 3,525,336 - BWI76_RS16995 0.68 -1.1 3,525,491 + BWI76_RS16995 0.78 -0.4 3,525,532 + BWI76_RS16995 0.81 -0.6 3,525,545 - BWI76_RS16995 0.82 -0.7 3,525,897 + BWI76_RS17000 0.21 -1.1 3,525,998 - BWI76_RS17000 0.47 -0.8 3,526,143 - BWI76_RS17000 0.86 -0.8 3,526,205 + -0.8 3,526,459 + +0.6 3,526,630 - -0.0 3,526,671 + -0.1 3,526,854 + BWI76_RS17005 0.42 +0.3 3,526,958 + BWI76_RS17005 0.62 +0.1 3,526,965 + BWI76_RS17005 0.64 +0.0 3,527,044 + BWI76_RS17005 0.79 -0.0 3,527,050 + BWI76_RS17005 0.80 -0.2 3,527,188 + -0.2
Or see this region's nucleotide sequence