Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02430 and BWI76_RS02435 overlap by 4 nucleotides BWI76_RS02435 and BWI76_RS02440 are separated by 140 nucleotides BWI76_RS02440 and BWI76_RS02445 are separated by 10 nucleotides BWI76_RS02445 and BWI76_RS02450 are separated by 10 nucleotides
BWI76_RS02430: BWI76_RS02430 - multidrug transporter, at 499,179 to 499,496
_RS02430
BWI76_RS02435: BWI76_RS02435 - outer membrane lipoprotein Blc, at 499,493 to 500,023
_RS02435
BWI76_RS02440: BWI76_RS02440 - fumarate reductase subunit D, at 500,164 to 500,523
_RS02440
BWI76_RS02445: BWI76_RS02445 - fumarate reductase subunit C, at 500,534 to 500,929
_RS02445
BWI76_RS02450: BWI76_RS02450 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 500,940 to 501,674
_RS02450
Position (kb) 500
501 Strain fitness (log2 ratio) -1
0
1
2 at 499.196 kb on + strand at 499.202 kb on - strand at 499.211 kb on + strand, within BWI76_RS02430 at 499.211 kb on + strand, within BWI76_RS02430 at 499.219 kb on - strand, within BWI76_RS02430 at 499.220 kb on + strand, within BWI76_RS02430 at 499.220 kb on + strand, within BWI76_RS02430 at 499.308 kb on + strand, within BWI76_RS02430 at 499.324 kb on - strand, within BWI76_RS02430 at 499.359 kb on + strand, within BWI76_RS02430 at 499.392 kb on - strand, within BWI76_RS02430 at 499.397 kb on - strand, within BWI76_RS02430 at 499.468 kb on + strand at 499.491 kb on + strand at 499.499 kb on - strand at 499.510 kb on + strand at 499.606 kb on + strand, within BWI76_RS02435 at 499.614 kb on - strand, within BWI76_RS02435 at 499.828 kb on + strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.934 kb on - strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 500.052 kb on + strand at 500.299 kb on - strand, within BWI76_RS02440 at 500.304 kb on + strand, within BWI76_RS02440 at 500.463 kb on - strand, within BWI76_RS02440 at 500.543 kb on - strand at 500.543 kb on - strand at 500.586 kb on + strand, within BWI76_RS02445 at 500.762 kb on + strand, within BWI76_RS02445 at 500.848 kb on + strand, within BWI76_RS02445 at 500.850 kb on + strand, within BWI76_RS02445 at 500.911 kb on - strand at 500.948 kb on + strand at 500.956 kb on - strand at 500.994 kb on - strand at 501.287 kb on + strand, within BWI76_RS02450 at 501.420 kb on - strand, within BWI76_RS02450 at 501.475 kb on - strand, within BWI76_RS02450 at 501.505 kb on + strand, within BWI76_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL remove 499,196 + +0.2 499,202 - -1.5 499,211 + BWI76_RS02430 0.10 -0.6 499,211 + BWI76_RS02430 0.10 +0.3 499,219 - BWI76_RS02430 0.13 -0.1 499,220 + BWI76_RS02430 0.13 -0.1 499,220 + BWI76_RS02430 0.13 +0.1 499,308 + BWI76_RS02430 0.41 +0.6 499,324 - BWI76_RS02430 0.46 +0.2 499,359 + BWI76_RS02430 0.57 +0.1 499,392 - BWI76_RS02430 0.67 +0.3 499,397 - BWI76_RS02430 0.69 +0.2 499,468 + +0.1 499,491 + -0.3 499,499 - -0.2 499,510 + +1.1 499,606 + BWI76_RS02435 0.21 -0.4 499,614 - BWI76_RS02435 0.23 +0.0 499,828 + BWI76_RS02435 0.63 +0.7 499,836 - BWI76_RS02435 0.65 +0.4 499,836 - BWI76_RS02435 0.65 -0.3 499,836 - BWI76_RS02435 0.65 +1.4 499,934 - BWI76_RS02435 0.83 -0.9 499,960 + BWI76_RS02435 0.88 -0.3 499,960 + BWI76_RS02435 0.88 +0.4 499,960 + BWI76_RS02435 0.88 -0.2 500,052 + +0.8 500,299 - BWI76_RS02440 0.38 +0.1 500,304 + BWI76_RS02440 0.39 +2.3 500,463 - BWI76_RS02440 0.83 +0.4 500,543 - -1.0 500,543 - +0.1 500,586 + BWI76_RS02445 0.13 +0.5 500,762 + BWI76_RS02445 0.58 -0.9 500,848 + BWI76_RS02445 0.79 +0.5 500,850 + BWI76_RS02445 0.80 +0.1 500,911 - -0.9 500,948 + -0.4 500,956 - +0.1 500,994 - -0.1 501,287 + BWI76_RS02450 0.47 -0.2 501,420 - BWI76_RS02450 0.65 -0.3 501,475 - BWI76_RS02450 0.73 -0.1 501,505 + BWI76_RS02450 0.77 +0.3
Or see this region's nucleotide sequence