Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01780 and BWI76_RS01785 are separated by 5 nucleotides BWI76_RS01785 and BWI76_RS01790 are separated by 38 nucleotides BWI76_RS01790 and BWI76_RS01795 are separated by 121 nucleotides BWI76_RS01795 and BWI76_RS01800 are separated by 282 nucleotides
BWI76_RS01780: BWI76_RS01780 - SPFH domain / Band 7 family protein, at 363,171 to 364,298
_RS01780
BWI76_RS01785: BWI76_RS01785 - nucleotidyltransferase, at 364,304 to 365,092
_RS01785
BWI76_RS01790: BWI76_RS01790 - lysine-sensitive aspartokinase 3, at 365,131 to 366,480
_RS01790
BWI76_RS01795: BWI76_RS01795 - hypothetical protein, at 366,602 to 366,964
_RS01795
BWI76_RS01800: BWI76_RS01800 - glucose-6-phosphate isomerase, at 367,247 to 368,896
_RS01800
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1 at 364.145 kb on + strand, within BWI76_RS01780 at 364.211 kb on + strand at 364.216 kb on + strand at 364.216 kb on + strand at 364.454 kb on - strand, within BWI76_RS01785 at 364.515 kb on + strand, within BWI76_RS01785 at 364.854 kb on + strand, within BWI76_RS01785 at 364.923 kb on - strand, within BWI76_RS01785 at 364.928 kb on - strand, within BWI76_RS01785 at 364.986 kb on + strand, within BWI76_RS01785 at 364.996 kb on + strand, within BWI76_RS01785 at 365.004 kb on - strand, within BWI76_RS01785 at 365.065 kb on + strand at 365.273 kb on - strand, within BWI76_RS01790 at 365.344 kb on - strand, within BWI76_RS01790 at 365.381 kb on - strand, within BWI76_RS01790 at 365.450 kb on - strand, within BWI76_RS01790 at 365.481 kb on - strand, within BWI76_RS01790 at 365.539 kb on + strand, within BWI76_RS01790 at 365.547 kb on - strand, within BWI76_RS01790 at 365.661 kb on + strand, within BWI76_RS01790 at 365.689 kb on - strand, within BWI76_RS01790 at 365.694 kb on - strand, within BWI76_RS01790 at 365.790 kb on + strand, within BWI76_RS01790 at 365.860 kb on - strand, within BWI76_RS01790 at 365.908 kb on + strand, within BWI76_RS01790 at 365.916 kb on - strand, within BWI76_RS01790 at 365.916 kb on - strand, within BWI76_RS01790 at 366.119 kb on - strand, within BWI76_RS01790 at 366.166 kb on + strand, within BWI76_RS01790 at 366.234 kb on + strand, within BWI76_RS01790 at 366.242 kb on - strand, within BWI76_RS01790 at 366.253 kb on + strand, within BWI76_RS01790 at 366.418 kb on + strand at 366.663 kb on + strand, within BWI76_RS01795 at 366.681 kb on + strand, within BWI76_RS01795 at 366.801 kb on + strand, within BWI76_RS01795 at 366.931 kb on + strand at 366.938 kb on - strand at 366.990 kb on - strand at 367.238 kb on + strand at 367.265 kb on + strand at 367.443 kb on - strand, within BWI76_RS01800
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL remove 364,145 + BWI76_RS01780 0.86 -0.4 364,211 + -0.9 364,216 + -0.6 364,216 + +1.6 364,454 - BWI76_RS01785 0.19 +0.2 364,515 + BWI76_RS01785 0.27 -0.1 364,854 + BWI76_RS01785 0.70 -0.9 364,923 - BWI76_RS01785 0.78 +0.1 364,928 - BWI76_RS01785 0.79 +0.2 364,986 + BWI76_RS01785 0.86 -0.2 364,996 + BWI76_RS01785 0.88 -0.5 365,004 - BWI76_RS01785 0.89 -0.7 365,065 + +0.0 365,273 - BWI76_RS01790 0.11 -1.5 365,344 - BWI76_RS01790 0.16 -1.4 365,381 - BWI76_RS01790 0.19 -0.6 365,450 - BWI76_RS01790 0.24 -0.9 365,481 - BWI76_RS01790 0.26 -1.0 365,539 + BWI76_RS01790 0.30 -1.5 365,547 - BWI76_RS01790 0.31 -0.3 365,661 + BWI76_RS01790 0.39 -1.2 365,689 - BWI76_RS01790 0.41 -0.2 365,694 - BWI76_RS01790 0.42 -1.0 365,790 + BWI76_RS01790 0.49 -1.0 365,860 - BWI76_RS01790 0.54 -0.9 365,908 + BWI76_RS01790 0.58 -0.3 365,916 - BWI76_RS01790 0.58 -0.7 365,916 - BWI76_RS01790 0.58 -2.2 366,119 - BWI76_RS01790 0.73 -0.8 366,166 + BWI76_RS01790 0.77 -0.3 366,234 + BWI76_RS01790 0.82 -0.8 366,242 - BWI76_RS01790 0.82 -0.8 366,253 + BWI76_RS01790 0.83 +0.4 366,418 + -1.2 366,663 + BWI76_RS01795 0.17 -0.6 366,681 + BWI76_RS01795 0.22 +0.2 366,801 + BWI76_RS01795 0.55 -0.9 366,931 + -0.2 366,938 - +0.0 366,990 - +0.6 367,238 + -0.2 367,265 + -1.5 367,443 - BWI76_RS01800 0.12 -0.4
Or see this region's nucleotide sequence