Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19590

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19585 and HSERO_RS19590 are separated by 220 nucleotidesHSERO_RS19590 and HSERO_RS19595 are separated by 110 nucleotides HSERO_RS19585: HSERO_RS19585 - peptidase M61, at 4,487,596 to 4,489,398 _RS19585 HSERO_RS19590: HSERO_RS19590 - dihydropyrimidine dehydrogenase subunit A, at 4,489,619 to 4,491,082 _RS19590 HSERO_RS19595: HSERO_RS19595 - glutamate synthase, at 4,491,193 to 4,495,869 _RS19595 Position (kb) 4489 4490 4491 4492Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4488.630 kb on - strand, within HSERO_RS19585at 4488.754 kb on - strand, within HSERO_RS19585at 4488.830 kb on + strand, within HSERO_RS19585at 4488.845 kb on - strand, within HSERO_RS19585at 4489.013 kb on + strand, within HSERO_RS19585at 4489.031 kb on - strand, within HSERO_RS19585at 4489.122 kb on - strand, within HSERO_RS19585at 4489.299 kb on - strandat 4489.436 kb on + strandat 4489.436 kb on + strandat 4489.459 kb on - strandat 4489.779 kb on + strand, within HSERO_RS19590at 4490.705 kb on - strand, within HSERO_RS19590at 4491.130 kb on - strandat 4491.599 kb on + strandat 4491.632 kb on + strandat 4491.694 kb on + strand, within HSERO_RS19595at 4491.731 kb on + strand, within HSERO_RS19595at 4491.846 kb on + strand, within HSERO_RS19595at 4491.854 kb on - strand, within HSERO_RS19595at 4492.046 kb on + strand, within HSERO_RS19595at 4492.046 kb on + strand, within HSERO_RS19595at 4492.046 kb on + strand, within HSERO_RS19595at 4492.054 kb on - strand, within HSERO_RS19595at 4492.054 kb on - strand, within HSERO_RS19595at 4492.054 kb on - strand, within HSERO_RS19595

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,488,630 - HSERO_RS19585 0.57 +1.0
4,488,754 - HSERO_RS19585 0.64 +3.4
4,488,830 + HSERO_RS19585 0.68 -0.2
4,488,845 - HSERO_RS19585 0.69 -0.0
4,489,013 + HSERO_RS19585 0.79 +0.9
4,489,031 - HSERO_RS19585 0.80 +0.9
4,489,122 - HSERO_RS19585 0.85 +0.9
4,489,299 - +0.5
4,489,436 + -0.9
4,489,436 + +0.1
4,489,459 - -0.6
4,489,779 + HSERO_RS19590 0.11 -1.1
4,490,705 - HSERO_RS19590 0.74 -1.1
4,491,130 - -0.5
4,491,599 + +0.3
4,491,632 + -0.9
4,491,694 + HSERO_RS19595 0.11 -1.4
4,491,731 + HSERO_RS19595 0.12 -1.3
4,491,846 + HSERO_RS19595 0.14 +0.4
4,491,854 - HSERO_RS19595 0.14 -0.7
4,492,046 + HSERO_RS19595 0.18 +0.1
4,492,046 + HSERO_RS19595 0.18 +2.3
4,492,046 + HSERO_RS19595 0.18 -0.8
4,492,054 - HSERO_RS19595 0.18 -1.8
4,492,054 - HSERO_RS19595 0.18 +0.1
4,492,054 - HSERO_RS19595 0.18 -0.6

Or see this region's nucleotide sequence