Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18980 and HSERO_RS18985 are separated by 35 nucleotides HSERO_RS18985 and HSERO_RS18990 overlap by 1 nucleotides HSERO_RS18990 and HSERO_RS18995 are separated by 77 nucleotides HSERO_RS18995 and HSERO_RS19000 are separated by 82 nucleotides
HSERO_RS18980: HSERO_RS18980 - hypothetical protein, at 4,354,239 to 4,354,466
_RS18980
HSERO_RS18985: HSERO_RS18985 - NlpD lipoprotein, at 4,354,502 to 4,355,266
_RS18985
HSERO_RS18990: HSERO_RS18990 - pyrroline-5-carboxylate reductase, at 4,355,266 to 4,356,048
_RS18990
HSERO_RS18995: HSERO_RS18995 - hypothetical protein, at 4,356,126 to 4,356,827
_RS18995
HSERO_RS19000: HSERO_RS19000 - twitching motility protein PilT, at 4,356,910 to 4,357,965
_RS19000
Position (kb) 4355
4356
4357 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4354.272 kb on - strand, within HSERO_RS18980 at 4354.421 kb on - strand, within HSERO_RS18980 at 4354.609 kb on + strand, within HSERO_RS18985 at 4354.634 kb on - strand, within HSERO_RS18985 at 4354.650 kb on + strand, within HSERO_RS18985 at 4354.650 kb on + strand, within HSERO_RS18985 at 4354.697 kb on - strand, within HSERO_RS18985 at 4354.868 kb on - strand, within HSERO_RS18985 at 4354.943 kb on + strand, within HSERO_RS18985 at 4355.017 kb on + strand, within HSERO_RS18985 at 4355.059 kb on + strand at 4355.114 kb on - strand, within HSERO_RS18985 at 4355.151 kb on - strand, within HSERO_RS18985 at 4355.212 kb on + strand at 4355.292 kb on + strand at 4355.317 kb on + strand at 4355.324 kb on + strand at 4355.365 kb on + strand, within HSERO_RS18990 at 4355.384 kb on + strand, within HSERO_RS18990 at 4355.438 kb on - strand, within HSERO_RS18990 at 4355.471 kb on + strand, within HSERO_RS18990 at 4355.575 kb on - strand, within HSERO_RS18990 at 4355.677 kb on - strand, within HSERO_RS18990 at 4355.734 kb on - strand, within HSERO_RS18990 at 4355.914 kb on + strand, within HSERO_RS18990 at 4356.090 kb on + strand at 4356.458 kb on - strand, within HSERO_RS18995 at 4356.537 kb on - strand, within HSERO_RS18995 at 4356.539 kb on - strand, within HSERO_RS18995 at 4356.894 kb on - strand at 4356.912 kb on - strand at 4356.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,354,272 - HSERO_RS18980 0.14 -1.1 4,354,421 - HSERO_RS18980 0.80 +0.5 4,354,609 + HSERO_RS18985 0.14 +0.3 4,354,634 - HSERO_RS18985 0.17 +0.6 4,354,650 + HSERO_RS18985 0.19 +0.7 4,354,650 + HSERO_RS18985 0.19 -0.6 4,354,697 - HSERO_RS18985 0.25 +0.1 4,354,868 - HSERO_RS18985 0.48 -0.2 4,354,943 + HSERO_RS18985 0.58 -0.7 4,355,017 + HSERO_RS18985 0.67 +1.4 4,355,059 + +0.8 4,355,114 - HSERO_RS18985 0.80 +0.7 4,355,151 - HSERO_RS18985 0.85 +0.6 4,355,212 + -0.1 4,355,292 + -2.0 4,355,317 + -1.1 4,355,324 + -1.4 4,355,365 + HSERO_RS18990 0.13 +0.8 4,355,384 + HSERO_RS18990 0.15 -3.0 4,355,438 - HSERO_RS18990 0.22 -0.6 4,355,471 + HSERO_RS18990 0.26 +1.2 4,355,575 - HSERO_RS18990 0.39 -0.6 4,355,677 - HSERO_RS18990 0.52 -3.8 4,355,734 - HSERO_RS18990 0.60 -3.4 4,355,914 + HSERO_RS18990 0.83 -2.8 4,356,090 + -0.1 4,356,458 - HSERO_RS18995 0.47 -0.4 4,356,537 - HSERO_RS18995 0.59 -0.6 4,356,539 - HSERO_RS18995 0.59 -3.0 4,356,894 - -0.0 4,356,912 - +0.4 4,356,953 + -0.4
Or see this region's nucleotide sequence