Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08650 and HSERO_RS08655 are separated by 1 nucleotides HSERO_RS08655 and HSERO_RS08660 are separated by 76 nucleotides HSERO_RS08660 and HSERO_RS08665 are separated by 224 nucleotides
HSERO_RS08650: HSERO_RS08650 - acetolactate synthase, at 1,963,637 to 1,965,355
_RS08650
HSERO_RS08655: HSERO_RS08655 - acetolactate synthase, at 1,965,357 to 1,965,848
_RS08655
HSERO_RS08660: HSERO_RS08660 - ketol-acid reductoisomerase, at 1,965,925 to 1,966,941
_RS08660
HSERO_RS08665: HSERO_RS08665 - hypothetical protein, at 1,967,166 to 1,967,954
_RS08665
Position (kb) 1965
1966
1967 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1964.998 kb on - strand, within HSERO_RS08650 at 1965.003 kb on - strand, within HSERO_RS08650 at 1965.289 kb on + strand at 1965.297 kb on - strand at 1965.457 kb on + strand, within HSERO_RS08655 at 1965.465 kb on - strand, within HSERO_RS08655 at 1965.489 kb on + strand, within HSERO_RS08655 at 1965.877 kb on + strand at 1965.903 kb on + strand at 1965.911 kb on - strand at 1966.060 kb on - strand, within HSERO_RS08660 at 1966.060 kb on - strand, within HSERO_RS08660 at 1966.731 kb on + strand, within HSERO_RS08660 at 1966.731 kb on + strand, within HSERO_RS08660 at 1966.772 kb on - strand, within HSERO_RS08660 at 1967.041 kb on - strand at 1967.108 kb on - strand at 1967.162 kb on + strand at 1967.246 kb on - strand, within HSERO_RS08665 at 1967.354 kb on + strand, within HSERO_RS08665 at 1967.368 kb on - strand, within HSERO_RS08665 at 1967.382 kb on + strand, within HSERO_RS08665 at 1967.459 kb on + strand, within HSERO_RS08665 at 1967.597 kb on + strand at 1967.605 kb on - strand, within HSERO_RS08665 at 1967.605 kb on - strand at 1967.797 kb on - strand, within HSERO_RS08665 at 1967.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,964,998 - HSERO_RS08650 0.79 -0.0 1,965,003 - HSERO_RS08650 0.79 -1.4 1,965,289 + -0.8 1,965,297 - -2.4 1,965,457 + HSERO_RS08655 0.20 -1.1 1,965,465 - HSERO_RS08655 0.22 +0.6 1,965,489 + HSERO_RS08655 0.27 -0.2 1,965,877 + -0.6 1,965,903 + -0.2 1,965,911 - +2.5 1,966,060 - HSERO_RS08660 0.13 -1.3 1,966,060 - HSERO_RS08660 0.13 -1.6 1,966,731 + HSERO_RS08660 0.79 -1.2 1,966,731 + HSERO_RS08660 0.79 -2.0 1,966,772 - HSERO_RS08660 0.83 -1.1 1,967,041 - -2.3 1,967,108 - -1.0 1,967,162 + -0.4 1,967,246 - HSERO_RS08665 0.10 -0.8 1,967,354 + HSERO_RS08665 0.24 -0.1 1,967,368 - HSERO_RS08665 0.26 +0.2 1,967,382 + HSERO_RS08665 0.27 -0.6 1,967,459 + HSERO_RS08665 0.37 -0.9 1,967,597 + +1.1 1,967,605 - HSERO_RS08665 0.56 -0.1 1,967,605 - +0.4 1,967,797 - HSERO_RS08665 0.80 -1.9 1,967,888 + -0.3
Or see this region's nucleotide sequence