Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08480 and HSERO_RS08485 overlap by 1 nucleotides HSERO_RS08485 and HSERO_RS08490 are separated by 131 nucleotides HSERO_RS08490 and HSERO_RS08495 are separated by 306 nucleotides
HSERO_RS08480: HSERO_RS08480 - chemotaxis protein CheA, at 1,929,027 to 1,931,540
_RS08480
HSERO_RS08485: HSERO_RS08485 - hypothetical protein, at 1,931,540 to 1,931,785
_RS08485
HSERO_RS08490: HSERO_RS08490 - chemotaxis protein CheY, at 1,931,917 to 1,932,297
_RS08490
HSERO_RS08495: HSERO_RS08495 - hypothetical protein, at 1,932,604 to 1,933,485
_RS08495
Position (kb) 1931
1932 Strain fitness (log2 ratio) -1
0
1
2 at 1930.571 kb on + strand, within HSERO_RS08480 at 1930.619 kb on + strand, within HSERO_RS08480 at 1930.694 kb on + strand, within HSERO_RS08480 at 1930.732 kb on - strand, within HSERO_RS08480 at 1930.732 kb on - strand, within HSERO_RS08480 at 1930.734 kb on - strand at 1930.750 kb on + strand, within HSERO_RS08480 at 1930.889 kb on + strand, within HSERO_RS08480 at 1931.040 kb on - strand, within HSERO_RS08480 at 1931.177 kb on + strand, within HSERO_RS08480 at 1931.210 kb on - strand, within HSERO_RS08480 at 1931.310 kb on - strand at 1931.375 kb on - strand at 1931.394 kb on - strand at 1931.505 kb on + strand at 1931.585 kb on + strand, within HSERO_RS08485 at 1931.925 kb on + strand at 1931.991 kb on - strand, within HSERO_RS08490 at 1932.292 kb on + strand at 1932.319 kb on - strand at 1932.684 kb on + strand at 1932.684 kb on + strand at 1932.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,930,571 + HSERO_RS08480 0.61 -0.9 1,930,619 + HSERO_RS08480 0.63 -0.5 1,930,694 + HSERO_RS08480 0.66 -0.3 1,930,732 - HSERO_RS08480 0.68 -0.2 1,930,732 - HSERO_RS08480 0.68 -0.9 1,930,734 - -0.2 1,930,750 + HSERO_RS08480 0.69 +0.2 1,930,889 + HSERO_RS08480 0.74 +1.7 1,931,040 - HSERO_RS08480 0.80 +0.1 1,931,177 + HSERO_RS08480 0.86 -0.0 1,931,210 - HSERO_RS08480 0.87 -0.1 1,931,310 - -0.3 1,931,375 - -0.1 1,931,394 - -0.5 1,931,505 + +0.3 1,931,585 + HSERO_RS08485 0.18 +2.2 1,931,925 + -0.0 1,931,991 - HSERO_RS08490 0.19 -0.5 1,932,292 + -0.8 1,932,319 - +0.2 1,932,684 + +0.0 1,932,684 + -0.3 1,932,692 - -0.2
Or see this region's nucleotide sequence