Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05495 and HSERO_RS05500 are separated by 115 nucleotides HSERO_RS05500 and HSERO_RS05505 are separated by 101 nucleotides HSERO_RS05505 and HSERO_RS05510 are separated by 43 nucleotides
HSERO_RS05495: HSERO_RS05495 - hypothetical protein, at 1,244,166 to 1,245,071
_RS05495
HSERO_RS05500: HSERO_RS05500 - transaldolase, at 1,245,187 to 1,246,122
_RS05500
HSERO_RS05505: HSERO_RS05505 - transcriptional regulator, at 1,246,224 to 1,247,078
_RS05505
HSERO_RS05510: HSERO_RS05510 - glucose-6-phosphate 1-dehydrogenase, at 1,247,122 to 1,248,588
_RS05510
Position (kb) 1245
1246
1247 Strain fitness (log2 ratio) -1
0
1 at 1244.209 kb on + strand at 1244.472 kb on - strand, within HSERO_RS05495 at 1244.546 kb on - strand, within HSERO_RS05495 at 1244.565 kb on + strand, within HSERO_RS05495 at 1244.599 kb on - strand, within HSERO_RS05495 at 1244.671 kb on - strand, within HSERO_RS05495 at 1244.706 kb on + strand, within HSERO_RS05495 at 1244.731 kb on - strand, within HSERO_RS05495 at 1244.746 kb on - strand, within HSERO_RS05495 at 1244.764 kb on + strand, within HSERO_RS05495 at 1244.772 kb on - strand at 1244.772 kb on - strand, within HSERO_RS05495 at 1245.007 kb on - strand at 1245.021 kb on - strand at 1245.031 kb on - strand at 1245.053 kb on + strand at 1245.891 kb on + strand, within HSERO_RS05500 at 1246.204 kb on - strand at 1246.421 kb on - strand, within HSERO_RS05505 at 1246.595 kb on + strand, within HSERO_RS05505 at 1246.622 kb on - strand, within HSERO_RS05505 at 1246.954 kb on + strand, within HSERO_RS05505 at 1246.962 kb on - strand, within HSERO_RS05505 at 1247.040 kb on - strand at 1247.044 kb on + strand at 1247.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,244,209 + +1.4 1,244,472 - HSERO_RS05495 0.34 +1.7 1,244,546 - HSERO_RS05495 0.42 -0.6 1,244,565 + HSERO_RS05495 0.44 -0.1 1,244,599 - HSERO_RS05495 0.48 -0.5 1,244,671 - HSERO_RS05495 0.56 -0.1 1,244,706 + HSERO_RS05495 0.60 +0.1 1,244,731 - HSERO_RS05495 0.62 +0.5 1,244,746 - HSERO_RS05495 0.64 -0.2 1,244,764 + HSERO_RS05495 0.66 -0.3 1,244,772 - -0.7 1,244,772 - HSERO_RS05495 0.67 -0.3 1,245,007 - -0.6 1,245,021 - -0.1 1,245,031 - +0.7 1,245,053 + -0.0 1,245,891 + HSERO_RS05500 0.75 -1.0 1,246,204 - -0.5 1,246,421 - HSERO_RS05505 0.23 -0.1 1,246,595 + HSERO_RS05505 0.43 -1.5 1,246,622 - HSERO_RS05505 0.47 +0.3 1,246,954 + HSERO_RS05505 0.85 +0.1 1,246,962 - HSERO_RS05505 0.86 -1.1 1,247,040 - -0.2 1,247,044 + -0.3 1,247,089 - +0.7
Or see this region's nucleotide sequence