Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03435 and HSERO_RS03440 are separated by 276 nucleotides HSERO_RS03440 and HSERO_RS03445 overlap by 1 nucleotides HSERO_RS03445 and HSERO_RS03450 are separated by 53 nucleotides HSERO_RS03450 and HSERO_RS03455 are separated by 9 nucleotides
HSERO_RS03435: HSERO_RS03435 - bacterioferritin, at 752,135 to 752,614
_RS03435
HSERO_RS03440: HSERO_RS03440 - biopolymer transporter ExbD, at 752,891 to 753,307
_RS03440
HSERO_RS03445: HSERO_RS03445 - biopolymer transport transmembrane protein, at 753,307 to 754,038
_RS03445
HSERO_RS03450: HSERO_RS03450 - energy transducer protein TonB, at 754,092 to 754,790
_RS03450
HSERO_RS03455: HSERO_RS03455 - regulatory or redox protein complexing with Bfr, in iron storage and mobility, at 754,800 to 755,027
_RS03455
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 752.568 kb on - strand at 752.572 kb on + strand at 752.572 kb on + strand at 752.580 kb on - strand at 752.580 kb on - strand at 752.615 kb on - strand at 752.711 kb on - strand at 752.744 kb on + strand at 752.762 kb on - strand at 752.763 kb on - strand at 752.882 kb on + strand at 753.020 kb on - strand, within HSERO_RS03440 at 753.123 kb on - strand, within HSERO_RS03440 at 753.164 kb on - strand, within HSERO_RS03440 at 753.238 kb on - strand, within HSERO_RS03440 at 753.260 kb on - strand, within HSERO_RS03440 at 753.499 kb on - strand, within HSERO_RS03445 at 753.595 kb on + strand, within HSERO_RS03445 at 753.627 kb on - strand, within HSERO_RS03445 at 753.822 kb on + strand, within HSERO_RS03445 at 753.830 kb on - strand, within HSERO_RS03445 at 754.002 kb on + strand at 754.384 kb on - strand, within HSERO_RS03450 at 754.502 kb on + strand, within HSERO_RS03450 at 754.722 kb on + strand at 754.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 752,568 - +0.1 752,572 + -0.1 752,572 + -0.8 752,580 - +0.7 752,580 - -1.1 752,615 - -3.5 752,711 - -0.2 752,744 + +0.9 752,762 - +0.6 752,763 - -0.2 752,882 + +0.1 753,020 - HSERO_RS03440 0.31 -0.5 753,123 - HSERO_RS03440 0.56 -1.9 753,164 - HSERO_RS03440 0.65 -1.3 753,238 - HSERO_RS03440 0.83 +0.6 753,260 - HSERO_RS03440 0.88 -1.5 753,499 - HSERO_RS03445 0.26 -1.6 753,595 + HSERO_RS03445 0.39 -2.5 753,627 - HSERO_RS03445 0.44 -0.4 753,822 + HSERO_RS03445 0.70 -0.6 753,830 - HSERO_RS03445 0.71 -1.1 754,002 + -2.4 754,384 - HSERO_RS03450 0.42 -2.7 754,502 + HSERO_RS03450 0.59 -1.8 754,722 + -2.6 754,776 - -0.6
Or see this region's nucleotide sequence