Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03285

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03280 and HSERO_RS03285 are separated by 101 nucleotidesHSERO_RS03285 and HSERO_RS03290 are separated by 218 nucleotides HSERO_RS03280: HSERO_RS03280 - malate--CoA ligase subunit beta, at 722,392 to 723,552 _RS03280 HSERO_RS03285: HSERO_RS03285 - succinyl-CoA synthetase subsunit alpha, at 723,654 to 724,535 _RS03285 HSERO_RS03290: HSERO_RS03290 - membrane protein, at 724,754 to 725,479 _RS03290 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1at 724.168 kb on + strand, within HSERO_RS03285at 724.187 kb on - strand, within HSERO_RS03285at 724.625 kb on + strandat 724.782 kb on - strandat 725.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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724,168 + HSERO_RS03285 0.58 -2.7
724,187 - HSERO_RS03285 0.60 -1.5
724,625 + -0.4
724,782 - +0.2
725,429 + -1.3

Or see this region's nucleotide sequence