Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03225 and HSERO_RS03230 are separated by 42 nucleotides HSERO_RS03230 and HSERO_RS03235 are separated by 332 nucleotides HSERO_RS03235 and HSERO_RS03240 are separated by 211 nucleotides
HSERO_RS03225: HSERO_RS03225 - histidine kinase, at 709,408 to 710,982
_RS03225
HSERO_RS03230: HSERO_RS03230 - transcriptional regulator, at 711,025 to 711,738
_RS03230
HSERO_RS03235: HSERO_RS03235 - hypothetical protein, at 712,071 to 712,484
_RS03235
HSERO_RS03240: HSERO_RS03240 - membrane protein, at 712,696 to 713,649
_RS03240
Position (kb) 711
712 Strain fitness (log2 ratio) -1
0
1
2
3 at 710.238 kb on + strand, within HSERO_RS03225 at 710.306 kb on + strand, within HSERO_RS03225 at 710.317 kb on + strand, within HSERO_RS03225 at 710.556 kb on - strand, within HSERO_RS03225 at 710.694 kb on - strand, within HSERO_RS03225 at 710.738 kb on - strand, within HSERO_RS03225 at 710.740 kb on + strand, within HSERO_RS03225 at 710.873 kb on - strand at 710.944 kb on - strand at 711.089 kb on + strand at 711.333 kb on + strand, within HSERO_RS03230 at 711.341 kb on - strand, within HSERO_RS03230 at 711.433 kb on + strand, within HSERO_RS03230 at 711.483 kb on + strand, within HSERO_RS03230 at 711.508 kb on + strand, within HSERO_RS03230 at 711.563 kb on - strand, within HSERO_RS03230 at 711.587 kb on - strand, within HSERO_RS03230 at 711.620 kb on - strand, within HSERO_RS03230 at 711.856 kb on - strand at 711.866 kb on + strand at 711.866 kb on + strand at 711.951 kb on + strand at 712.231 kb on + strand, within HSERO_RS03235 at 712.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 710,238 + HSERO_RS03225 0.53 +2.2 710,306 + HSERO_RS03225 0.57 +1.2 710,317 + HSERO_RS03225 0.58 +1.3 710,556 - HSERO_RS03225 0.73 +0.9 710,694 - HSERO_RS03225 0.82 +1.7 710,738 - HSERO_RS03225 0.84 +0.9 710,740 + HSERO_RS03225 0.85 +1.6 710,873 - +0.9 710,944 - -0.4 711,089 + +0.7 711,333 + HSERO_RS03230 0.43 +2.2 711,341 - HSERO_RS03230 0.44 +0.5 711,433 + HSERO_RS03230 0.57 +1.2 711,483 + HSERO_RS03230 0.64 +1.7 711,508 + HSERO_RS03230 0.68 +2.7 711,563 - HSERO_RS03230 0.75 +2.8 711,587 - HSERO_RS03230 0.79 +1.8 711,620 - HSERO_RS03230 0.83 +1.9 711,856 - -0.4 711,866 + +0.3 711,866 + +0.3 711,951 + -0.2 712,231 + HSERO_RS03235 0.39 -1.1 712,588 + -1.1
Or see this region's nucleotide sequence