Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03215 and HSERO_RS03220 overlap by 11 nucleotides HSERO_RS03220 and HSERO_RS03225 are separated by 1 nucleotides HSERO_RS03225 and HSERO_RS03230 are separated by 42 nucleotides
HSERO_RS03215: HSERO_RS03215 - sodium:solute symporter, at 707,081 to 709,132
_RS03215
HSERO_RS03220: HSERO_RS03220 - sodium:solute symporter, at 709,122 to 709,406
_RS03220
HSERO_RS03225: HSERO_RS03225 - histidine kinase, at 709,408 to 710,982
_RS03225
HSERO_RS03230: HSERO_RS03230 - transcriptional regulator, at 711,025 to 711,738
_RS03230
Position (kb) 709
710
711 Strain fitness (log2 ratio) -1
0
1
2
3 at 708.499 kb on + strand, within HSERO_RS03215 at 708.514 kb on + strand, within HSERO_RS03215 at 708.576 kb on - strand, within HSERO_RS03215 at 708.578 kb on + strand, within HSERO_RS03215 at 708.591 kb on + strand, within HSERO_RS03215 at 708.591 kb on + strand, within HSERO_RS03215 at 708.599 kb on - strand, within HSERO_RS03215 at 708.599 kb on - strand, within HSERO_RS03215 at 708.631 kb on - strand, within HSERO_RS03215 at 708.693 kb on - strand, within HSERO_RS03215 at 708.722 kb on + strand, within HSERO_RS03215 at 708.750 kb on - strand, within HSERO_RS03215 at 709.493 kb on - strand at 709.742 kb on + strand, within HSERO_RS03225 at 709.742 kb on + strand, within HSERO_RS03225 at 709.750 kb on - strand, within HSERO_RS03225 at 709.750 kb on - strand, within HSERO_RS03225 at 709.750 kb on - strand, within HSERO_RS03225 at 709.862 kb on - strand, within HSERO_RS03225 at 709.871 kb on + strand, within HSERO_RS03225 at 709.876 kb on + strand, within HSERO_RS03225 at 709.876 kb on + strand, within HSERO_RS03225 at 709.884 kb on - strand, within HSERO_RS03225 at 709.886 kb on + strand, within HSERO_RS03225 at 709.969 kb on - strand, within HSERO_RS03225 at 710.016 kb on + strand, within HSERO_RS03225 at 710.238 kb on + strand, within HSERO_RS03225 at 710.306 kb on + strand, within HSERO_RS03225 at 710.317 kb on + strand, within HSERO_RS03225 at 710.556 kb on - strand, within HSERO_RS03225 at 710.694 kb on - strand, within HSERO_RS03225 at 710.738 kb on - strand, within HSERO_RS03225 at 710.740 kb on + strand, within HSERO_RS03225 at 710.873 kb on - strand at 710.944 kb on - strand at 711.089 kb on + strand at 711.333 kb on + strand, within HSERO_RS03230 at 711.341 kb on - strand, within HSERO_RS03230 at 711.433 kb on + strand, within HSERO_RS03230 at 711.483 kb on + strand, within HSERO_RS03230 at 711.508 kb on + strand, within HSERO_RS03230 at 711.563 kb on - strand, within HSERO_RS03230 at 711.587 kb on - strand, within HSERO_RS03230 at 711.620 kb on - strand, within HSERO_RS03230 at 711.856 kb on - strand at 711.866 kb on + strand at 711.866 kb on + strand at 711.951 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 708,499 + HSERO_RS03215 0.69 +1.6 708,514 + HSERO_RS03215 0.70 +1.1 708,576 - HSERO_RS03215 0.73 +1.5 708,578 + HSERO_RS03215 0.73 +1.7 708,591 + HSERO_RS03215 0.74 -0.9 708,591 + HSERO_RS03215 0.74 +1.5 708,599 - HSERO_RS03215 0.74 +1.1 708,599 - HSERO_RS03215 0.74 +0.8 708,631 - HSERO_RS03215 0.76 -0.0 708,693 - HSERO_RS03215 0.79 +1.4 708,722 + HSERO_RS03215 0.80 +0.2 708,750 - HSERO_RS03215 0.81 +1.6 709,493 - +1.0 709,742 + HSERO_RS03225 0.21 +2.0 709,742 + HSERO_RS03225 0.21 +1.3 709,750 - HSERO_RS03225 0.22 +1.6 709,750 - HSERO_RS03225 0.22 +0.7 709,750 - HSERO_RS03225 0.22 +1.1 709,862 - HSERO_RS03225 0.29 +1.7 709,871 + HSERO_RS03225 0.29 +1.2 709,876 + HSERO_RS03225 0.30 +1.8 709,876 + HSERO_RS03225 0.30 +1.2 709,884 - HSERO_RS03225 0.30 +1.6 709,886 + HSERO_RS03225 0.30 +1.7 709,969 - HSERO_RS03225 0.36 +0.9 710,016 + HSERO_RS03225 0.39 +2.3 710,238 + HSERO_RS03225 0.53 +2.2 710,306 + HSERO_RS03225 0.57 +1.2 710,317 + HSERO_RS03225 0.58 +1.3 710,556 - HSERO_RS03225 0.73 +0.9 710,694 - HSERO_RS03225 0.82 +1.7 710,738 - HSERO_RS03225 0.84 +0.9 710,740 + HSERO_RS03225 0.85 +1.6 710,873 - +0.9 710,944 - -0.4 711,089 + +0.7 711,333 + HSERO_RS03230 0.43 +2.2 711,341 - HSERO_RS03230 0.44 +0.5 711,433 + HSERO_RS03230 0.57 +1.2 711,483 + HSERO_RS03230 0.64 +1.7 711,508 + HSERO_RS03230 0.68 +2.7 711,563 - HSERO_RS03230 0.75 +2.8 711,587 - HSERO_RS03230 0.79 +1.8 711,620 - HSERO_RS03230 0.83 +1.9 711,856 - -0.4 711,866 + +0.3 711,866 + +0.3 711,951 + -0.2
Or see this region's nucleotide sequence