Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02315 and HSERO_RS02320 are separated by 14 nucleotides HSERO_RS02320 and HSERO_RS02325 overlap by 4 nucleotides HSERO_RS02325 and HSERO_RS02330 overlap by 8 nucleotides
HSERO_RS02315: HSERO_RS02315 - transcriptional regulator, at 507,140 to 507,844
_RS02315
HSERO_RS02320: HSERO_RS02320 - Holliday junction resolvase, at 507,859 to 508,245
_RS02320
HSERO_RS02325: HSERO_RS02325 - uracil phosphoribosyltransferase, at 508,242 to 508,754
_RS02325
HSERO_RS02330: HSERO_RS02330 - aspartate carbamoyltransferase, at 508,747 to 509,706
_RS02330
Position (kb) 508
509 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 507.245 kb on + strand, within HSERO_RS02315 at 507.357 kb on + strand, within HSERO_RS02315 at 507.381 kb on - strand, within HSERO_RS02315 at 507.411 kb on - strand, within HSERO_RS02315 at 507.427 kb on + strand, within HSERO_RS02315 at 507.598 kb on - strand, within HSERO_RS02315 at 507.716 kb on + strand, within HSERO_RS02315 at 508.254 kb on - strand at 508.288 kb on - strand at 508.402 kb on - strand, within HSERO_RS02325 at 508.535 kb on + strand, within HSERO_RS02325 at 508.543 kb on - strand, within HSERO_RS02325 at 508.543 kb on - strand, within HSERO_RS02325 at 508.641 kb on - strand, within HSERO_RS02325 at 508.749 kb on + strand at 508.817 kb on - strand at 508.843 kb on + strand, within HSERO_RS02330 at 509.011 kb on - strand, within HSERO_RS02330 at 509.035 kb on + strand, within HSERO_RS02330 at 509.043 kb on - strand, within HSERO_RS02330 at 509.222 kb on - strand at 509.341 kb on - strand, within HSERO_RS02330 at 509.419 kb on - strand, within HSERO_RS02330 at 509.547 kb on + strand, within HSERO_RS02330 at 509.582 kb on - strand, within HSERO_RS02330 at 509.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 507,245 + HSERO_RS02315 0.15 +0.3 507,357 + HSERO_RS02315 0.31 +0.2 507,381 - HSERO_RS02315 0.34 -4.7 507,411 - HSERO_RS02315 0.38 -0.3 507,427 + HSERO_RS02315 0.41 -1.3 507,598 - HSERO_RS02315 0.65 -1.9 507,716 + HSERO_RS02315 0.82 -0.2 508,254 - -5.0 508,288 - -1.8 508,402 - HSERO_RS02325 0.31 -1.0 508,535 + HSERO_RS02325 0.57 -0.6 508,543 - HSERO_RS02325 0.59 -1.6 508,543 - HSERO_RS02325 0.59 -1.3 508,641 - HSERO_RS02325 0.78 -1.3 508,749 + -3.1 508,817 - -3.7 508,843 + HSERO_RS02330 0.10 -1.4 509,011 - HSERO_RS02330 0.28 -4.7 509,035 + HSERO_RS02330 0.30 -2.3 509,043 - HSERO_RS02330 0.31 -4.3 509,222 - -0.7 509,341 - HSERO_RS02330 0.62 -5.3 509,419 - HSERO_RS02330 0.70 -4.9 509,547 + HSERO_RS02330 0.83 -3.3 509,582 - HSERO_RS02330 0.87 -4.2 509,688 - -5.5
Or see this region's nucleotide sequence