Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02215

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02210 and HSERO_RS02215 are separated by 216 nucleotidesHSERO_RS02215 and HSERO_RS02220 are separated by 64 nucleotides HSERO_RS02210: HSERO_RS02210 - sugar ABC transporter ATP-binding protein, at 482,125 to 483,243 _RS02210 HSERO_RS02215: HSERO_RS02215 - D-arabinitol 4-dehydrogenase, at 483,460 to 484,893 _RS02215 HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430 _RS02220 Position (kb) 483 484 485Strain fitness (log2 ratio) -2 -1 0 1at 482.492 kb on + strand, within HSERO_RS02210at 482.602 kb on + strand, within HSERO_RS02210at 482.690 kb on + strand, within HSERO_RS02210at 482.818 kb on + strand, within HSERO_RS02210at 483.190 kb on + strandat 483.352 kb on + strandat 483.361 kb on + strandat 483.457 kb on + strandat 483.465 kb on - strandat 483.465 kb on - strandat 484.316 kb on - strand, within HSERO_RS02215at 484.940 kb on - strandat 484.990 kb on + strandat 485.084 kb on - strandat 485.276 kb on - strand, within HSERO_RS02220at 485.276 kb on - strand, within HSERO_RS02220at 485.362 kb on + strand, within HSERO_RS02220at 485.367 kb on + strand, within HSERO_RS02220at 485.588 kb on + strand, within HSERO_RS02220at 485.598 kb on + strand, within HSERO_RS02220at 485.620 kb on + strand, within HSERO_RS02220at 485.620 kb on + strand, within HSERO_RS02220at 485.620 kb on + strand, within HSERO_RS02220at 485.628 kb on - strand, within HSERO_RS02220at 485.628 kb on - strand, within HSERO_RS02220at 485.831 kb on - strand, within HSERO_RS02220

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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482,492 + HSERO_RS02210 0.33 -0.3
482,602 + HSERO_RS02210 0.43 -0.2
482,690 + HSERO_RS02210 0.50 -0.3
482,818 + HSERO_RS02210 0.62 +0.5
483,190 + -0.2
483,352 + +0.4
483,361 + -1.4
483,457 + +0.0
483,465 - -0.7
483,465 - -2.3
484,316 - HSERO_RS02215 0.60 +0.3
484,940 - +0.8
484,990 + -1.3
485,084 - +0.9
485,276 - HSERO_RS02220 0.22 +0.7
485,276 - HSERO_RS02220 0.22 -0.0
485,362 + HSERO_RS02220 0.27 +0.4
485,367 + HSERO_RS02220 0.28 -0.0
485,588 + HSERO_RS02220 0.43 -0.5
485,598 + HSERO_RS02220 0.43 +0.2
485,620 + HSERO_RS02220 0.45 -1.2
485,620 + HSERO_RS02220 0.45 -0.4
485,620 + HSERO_RS02220 0.45 -0.5
485,628 - HSERO_RS02220 0.45 -1.5
485,628 - HSERO_RS02220 0.45 +0.2
485,831 - HSERO_RS02220 0.59 +0.9

Or see this region's nucleotide sequence