Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00785 and HSERO_RS00790 are separated by 437 nucleotides HSERO_RS00790 and HSERO_RS00795 are separated by 131 nucleotides HSERO_RS00795 and HSERO_RS00800 are separated by 12 nucleotides HSERO_RS00800 and HSERO_RS00805 are separated by 117 nucleotides
HSERO_RS00785: HSERO_RS00785 - acetyltransferase, at 165,253 to 165,843
_RS00785
HSERO_RS00790: HSERO_RS00790 - hypothetical protein, at 166,281 to 166,535
_RS00790
HSERO_RS00795: HSERO_RS00795 - glycerol-3-phosphate dehydrogenase, at 166,667 to 167,671
_RS00795
HSERO_RS00800: HSERO_RS00800 - hypothetical protein, at 167,684 to 168,133
_RS00800
HSERO_RS00805: HSERO_RS00805 - preprotein translocase subunit SecB, at 168,251 to 168,745
_RS00805
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1 at 165.709 kb on - strand, within HSERO_RS00785 at 165.712 kb on + strand, within HSERO_RS00785 at 165.728 kb on - strand, within HSERO_RS00785 at 165.819 kb on - strand at 165.882 kb on - strand at 165.908 kb on + strand at 165.908 kb on - strand at 165.908 kb on - strand at 165.916 kb on - strand at 166.123 kb on - strand at 166.134 kb on - strand at 166.388 kb on + strand, within HSERO_RS00790 at 166.534 kb on + strand at 166.616 kb on + strand at 166.972 kb on - strand, within HSERO_RS00795 at 167.053 kb on + strand, within HSERO_RS00795 at 167.256 kb on - strand, within HSERO_RS00795 at 167.347 kb on - strand, within HSERO_RS00795 at 167.592 kb on + strand at 167.827 kb on - strand, within HSERO_RS00800 at 167.869 kb on + strand, within HSERO_RS00800 at 167.901 kb on + strand, within HSERO_RS00800 at 167.909 kb on - strand, within HSERO_RS00800 at 167.925 kb on + strand, within HSERO_RS00800 at 167.988 kb on + strand, within HSERO_RS00800 at 167.996 kb on - strand, within HSERO_RS00800 at 168.083 kb on - strand, within HSERO_RS00800 at 168.242 kb on - strand at 168.291 kb on - strand at 168.330 kb on - strand, within HSERO_RS00805 at 168.435 kb on - strand, within HSERO_RS00805
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 165,709 - HSERO_RS00785 0.77 -1.5 165,712 + HSERO_RS00785 0.78 -0.0 165,728 - HSERO_RS00785 0.80 +0.3 165,819 - +0.0 165,882 - -1.2 165,908 + +0.9 165,908 - -1.3 165,908 - -1.0 165,916 - +0.9 166,123 - -0.6 166,134 - -0.0 166,388 + HSERO_RS00790 0.42 +0.4 166,534 + +1.0 166,616 + +0.4 166,972 - HSERO_RS00795 0.30 -1.4 167,053 + HSERO_RS00795 0.38 -2.2 167,256 - HSERO_RS00795 0.59 -0.3 167,347 - HSERO_RS00795 0.68 -0.3 167,592 + -0.5 167,827 - HSERO_RS00800 0.32 +0.2 167,869 + HSERO_RS00800 0.41 -0.2 167,901 + HSERO_RS00800 0.48 -0.5 167,909 - HSERO_RS00800 0.50 +1.3 167,925 + HSERO_RS00800 0.54 -0.3 167,988 + HSERO_RS00800 0.68 -0.4 167,996 - HSERO_RS00800 0.69 -0.8 168,083 - HSERO_RS00800 0.89 -0.6 168,242 - -1.2 168,291 - -0.7 168,330 - HSERO_RS00805 0.16 -0.6 168,435 - HSERO_RS00805 0.37 +0.1
Or see this region's nucleotide sequence