Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18930 and BWI76_RS18935 overlap by 4 nucleotides BWI76_RS18935 and BWI76_RS18940 overlap by 1 nucleotides BWI76_RS18940 and BWI76_RS18945 overlap by 1 nucleotides
BWI76_RS18930: BWI76_RS18930 - histidinol-phosphate transaminase, at 3,926,839 to 3,927,900
_RS18930
BWI76_RS18935: BWI76_RS18935 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 3,927,897 to 3,928,964
_RS18935
BWI76_RS18940: BWI76_RS18940 - imidazole glycerol phosphate synthase subunit HisH, at 3,928,964 to 3,929,554
_RS18940
BWI76_RS18945: BWI76_RS18945 - 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase, at 3,929,554 to 3,930,291
_RS18945
Position (kb)
3927
3928
3929 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3926.960 kb on + strand, within BWI76_RS18930 at 3927.342 kb on + strand, within BWI76_RS18930 at 3927.645 kb on - strand, within BWI76_RS18930 at 3927.841 kb on + strand at 3928.350 kb on + strand, within BWI76_RS18935 at 3928.358 kb on - strand, within BWI76_RS18935 at 3928.547 kb on + strand, within BWI76_RS18935 at 3928.788 kb on + strand, within BWI76_RS18935 at 3928.813 kb on + strand, within BWI76_RS18935 at 3928.820 kb on - strand, within BWI76_RS18935 at 3928.839 kb on - strand, within BWI76_RS18935 at 3929.066 kb on + strand, within BWI76_RS18940 at 3929.157 kb on - strand, within BWI76_RS18940 at 3929.368 kb on - strand, within BWI76_RS18940 at 3929.441 kb on + strand, within BWI76_RS18940 at 3929.476 kb on + strand, within BWI76_RS18940
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 3,926,960 + BWI76_RS18930 0.11 -1.8 3,927,342 + BWI76_RS18930 0.47 -2.2 3,927,645 - BWI76_RS18930 0.76 -2.4 3,927,841 + -3.2 3,928,350 + BWI76_RS18935 0.42 -3.7 3,928,358 - BWI76_RS18935 0.43 -2.3 3,928,547 + BWI76_RS18935 0.61 +0.3 3,928,788 + BWI76_RS18935 0.83 -3.5 3,928,813 + BWI76_RS18935 0.86 -2.3 3,928,820 - BWI76_RS18935 0.86 -2.2 3,928,839 - BWI76_RS18935 0.88 -3.1 3,929,066 + BWI76_RS18940 0.17 -3.8 3,929,157 - BWI76_RS18940 0.33 -2.8 3,929,368 - BWI76_RS18940 0.68 -2.7 3,929,441 + BWI76_RS18940 0.81 -2.3 3,929,476 + BWI76_RS18940 0.87 -2.9
Or see this region's nucleotide sequence