Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18850 and BWI76_RS18855 are separated by 30 nucleotides BWI76_RS18855 and BWI76_RS18860 are separated by 14 nucleotides
BWI76_RS18850: BWI76_RS18850 - iron-sulfur cluster assembly scaffold protein NifU, at 3,910,031 to 3,910,855
_RS18850
BWI76_RS18855: BWI76_RS18855 - cysteine desulfurase NifS, at 3,910,886 to 3,912,088
_RS18855
BWI76_RS18860: BWI76_RS18860 - homocitrate synthase, at 3,912,103 to 3,913,245
_RS18860
Position (kb)
3910
3911
3912
3913 Strain fitness (log2 ratio)
-1
0
1 at 3910.023 kb on - strand at 3910.273 kb on + strand, within BWI76_RS18850 at 3910.355 kb on - strand, within BWI76_RS18850 at 3910.481 kb on + strand, within BWI76_RS18850 at 3910.481 kb on + strand, within BWI76_RS18850 at 3910.481 kb on + strand, within BWI76_RS18850 at 3910.489 kb on - strand, within BWI76_RS18850 at 3910.709 kb on + strand, within BWI76_RS18850 at 3910.712 kb on - strand, within BWI76_RS18850 at 3910.782 kb on + strand at 3911.309 kb on + strand, within BWI76_RS18855 at 3911.517 kb on + strand, within BWI76_RS18855 at 3911.567 kb on + strand, within BWI76_RS18855 at 3911.838 kb on + strand, within BWI76_RS18855 at 3911.867 kb on - strand, within BWI76_RS18855 at 3912.030 kb on + strand at 3912.096 kb on - strand at 3912.636 kb on + strand, within BWI76_RS18860 at 3912.750 kb on + strand, within BWI76_RS18860 at 3912.954 kb on - strand, within BWI76_RS18860 at 3913.047 kb on + strand, within BWI76_RS18860
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 3,910,023 - +0.2 3,910,273 + BWI76_RS18850 0.29 +0.2 3,910,355 - BWI76_RS18850 0.39 -0.1 3,910,481 + BWI76_RS18850 0.55 -0.4 3,910,481 + BWI76_RS18850 0.55 +0.7 3,910,481 + BWI76_RS18850 0.55 -0.4 3,910,489 - BWI76_RS18850 0.56 +0.2 3,910,709 + BWI76_RS18850 0.82 -0.4 3,910,712 - BWI76_RS18850 0.83 +0.2 3,910,782 + -0.9 3,911,309 + BWI76_RS18855 0.35 +1.3 3,911,517 + BWI76_RS18855 0.52 +0.7 3,911,567 + BWI76_RS18855 0.57 -0.1 3,911,838 + BWI76_RS18855 0.79 +0.3 3,911,867 - BWI76_RS18855 0.82 +0.6 3,912,030 + +0.9 3,912,096 - +0.1 3,912,636 + BWI76_RS18860 0.47 +0.4 3,912,750 + BWI76_RS18860 0.57 -0.1 3,912,954 - BWI76_RS18860 0.74 -0.1 3,913,047 + BWI76_RS18860 0.83 -0.6
Or see this region's nucleotide sequence