Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18535 and BWI76_RS18540 are separated by 170 nucleotides BWI76_RS18540 and BWI76_RS18545 are separated by 132 nucleotides
BWI76_RS18535: BWI76_RS18535 - alpha/beta hydrolase, at 3,846,345 to 3,847,886
_RS18535
BWI76_RS18540: BWI76_RS18540 - signal transduction protein PmrD, at 3,848,057 to 3,848,314
_RS18540
BWI76_RS18545: BWI76_RS18545 - AMP nucleosidase, at 3,848,447 to 3,849,901
_RS18545
Position (kb)
3848
3849 Strain fitness (log2 ratio)
-1
0
1 at 3847.511 kb on - strand, within BWI76_RS18535 at 3847.568 kb on - strand, within BWI76_RS18535 at 3847.720 kb on + strand, within BWI76_RS18535 at 3847.732 kb on - strand at 3847.737 kb on + strand at 3847.737 kb on - strand at 3847.742 kb on + strand at 3847.745 kb on - strand at 3847.745 kb on - strand at 3847.750 kb on - strand at 3847.849 kb on + strand at 3847.931 kb on + strand at 3847.998 kb on - strand at 3848.033 kb on + strand at 3848.041 kb on - strand at 3848.041 kb on - strand at 3848.041 kb on - strand at 3848.041 kb on - strand at 3848.046 kb on + strand at 3848.089 kb on + strand, within BWI76_RS18540 at 3848.095 kb on + strand, within BWI76_RS18540 at 3848.097 kb on - strand, within BWI76_RS18540 at 3848.103 kb on - strand, within BWI76_RS18540 at 3848.103 kb on - strand, within BWI76_RS18540 at 3848.114 kb on + strand, within BWI76_RS18540 at 3848.120 kb on - strand, within BWI76_RS18540 at 3848.122 kb on - strand, within BWI76_RS18540 at 3848.177 kb on - strand, within BWI76_RS18540 at 3848.181 kb on + strand, within BWI76_RS18540 at 3848.207 kb on + strand, within BWI76_RS18540 at 3848.383 kb on + strand at 3848.399 kb on + strand at 3848.403 kb on - strand at 3848.480 kb on - strand at 3848.480 kb on - strand at 3848.480 kb on - strand at 3848.530 kb on + strand at 3848.530 kb on + strand at 3848.530 kb on + strand at 3848.673 kb on + strand, within BWI76_RS18545 at 3848.715 kb on - strand, within BWI76_RS18545 at 3848.822 kb on - strand, within BWI76_RS18545 at 3849.103 kb on - strand, within BWI76_RS18545
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 3,847,511 - BWI76_RS18535 0.76 +0.2 3,847,568 - BWI76_RS18535 0.79 +0.3 3,847,720 + BWI76_RS18535 0.89 +0.5 3,847,732 - +0.5 3,847,737 + +0.1 3,847,737 - -0.6 3,847,742 + -0.2 3,847,745 - -0.0 3,847,745 - -1.3 3,847,750 - +0.7 3,847,849 + +0.4 3,847,931 + +0.5 3,847,998 - +0.4 3,848,033 + -0.2 3,848,041 - +1.0 3,848,041 - +0.5 3,848,041 - -0.0 3,848,041 - -0.3 3,848,046 + -0.1 3,848,089 + BWI76_RS18540 0.12 +0.6 3,848,095 + BWI76_RS18540 0.15 +0.4 3,848,097 - BWI76_RS18540 0.16 +1.0 3,848,103 - BWI76_RS18540 0.18 +1.4 3,848,103 - BWI76_RS18540 0.18 +0.9 3,848,114 + BWI76_RS18540 0.22 +0.4 3,848,120 - BWI76_RS18540 0.24 +0.2 3,848,122 - BWI76_RS18540 0.25 +0.2 3,848,177 - BWI76_RS18540 0.47 -0.1 3,848,181 + BWI76_RS18540 0.48 +0.4 3,848,207 + BWI76_RS18540 0.58 +0.2 3,848,383 + -0.9 3,848,399 + +0.1 3,848,403 - +0.2 3,848,480 - -0.3 3,848,480 - -0.7 3,848,480 - -0.7 3,848,530 + -1.1 3,848,530 + +0.3 3,848,530 + -0.2 3,848,673 + BWI76_RS18545 0.16 -0.8 3,848,715 - BWI76_RS18545 0.18 -0.4 3,848,822 - BWI76_RS18545 0.26 -0.4 3,849,103 - BWI76_RS18545 0.45 -0.3
Or see this region's nucleotide sequence