Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18540

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18535 and BWI76_RS18540 are separated by 170 nucleotidesBWI76_RS18540 and BWI76_RS18545 are separated by 132 nucleotides BWI76_RS18535: BWI76_RS18535 - alpha/beta hydrolase, at 3,846,345 to 3,847,886 _RS18535 BWI76_RS18540: BWI76_RS18540 - signal transduction protein PmrD, at 3,848,057 to 3,848,314 _RS18540 BWI76_RS18545: BWI76_RS18545 - AMP nucleosidase, at 3,848,447 to 3,849,901 _RS18545 Position (kb) 3848 3849Strain fitness (log2 ratio) -1 0 1at 3847.511 kb on - strand, within BWI76_RS18535at 3847.568 kb on - strand, within BWI76_RS18535at 3847.720 kb on + strand, within BWI76_RS18535at 3847.732 kb on - strandat 3847.737 kb on + strandat 3847.737 kb on - strandat 3847.742 kb on + strandat 3847.745 kb on - strandat 3847.745 kb on - strandat 3847.750 kb on - strandat 3847.849 kb on + strandat 3847.931 kb on + strandat 3847.998 kb on - strandat 3848.033 kb on + strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.046 kb on + strandat 3848.089 kb on + strand, within BWI76_RS18540at 3848.095 kb on + strand, within BWI76_RS18540at 3848.097 kb on - strand, within BWI76_RS18540at 3848.103 kb on - strand, within BWI76_RS18540at 3848.103 kb on - strand, within BWI76_RS18540at 3848.114 kb on + strand, within BWI76_RS18540at 3848.120 kb on - strand, within BWI76_RS18540at 3848.122 kb on - strand, within BWI76_RS18540at 3848.177 kb on - strand, within BWI76_RS18540at 3848.181 kb on + strand, within BWI76_RS18540at 3848.207 kb on + strand, within BWI76_RS18540at 3848.383 kb on + strandat 3848.399 kb on + strandat 3848.403 kb on - strandat 3848.480 kb on - strandat 3848.480 kb on - strandat 3848.480 kb on - strandat 3848.530 kb on + strandat 3848.530 kb on + strandat 3848.530 kb on + strandat 3848.673 kb on + strand, within BWI76_RS18545at 3848.715 kb on - strand, within BWI76_RS18545at 3848.822 kb on - strand, within BWI76_RS18545at 3849.103 kb on - strand, within BWI76_RS18545

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
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3,847,511 - BWI76_RS18535 0.76 +0.2
3,847,568 - BWI76_RS18535 0.79 +0.3
3,847,720 + BWI76_RS18535 0.89 +0.5
3,847,732 - +0.5
3,847,737 + +0.1
3,847,737 - -0.6
3,847,742 + -0.2
3,847,745 - -0.0
3,847,745 - -1.3
3,847,750 - +0.7
3,847,849 + +0.4
3,847,931 + +0.5
3,847,998 - +0.4
3,848,033 + -0.2
3,848,041 - +1.0
3,848,041 - +0.5
3,848,041 - -0.0
3,848,041 - -0.3
3,848,046 + -0.1
3,848,089 + BWI76_RS18540 0.12 +0.6
3,848,095 + BWI76_RS18540 0.15 +0.4
3,848,097 - BWI76_RS18540 0.16 +1.0
3,848,103 - BWI76_RS18540 0.18 +1.4
3,848,103 - BWI76_RS18540 0.18 +0.9
3,848,114 + BWI76_RS18540 0.22 +0.4
3,848,120 - BWI76_RS18540 0.24 +0.2
3,848,122 - BWI76_RS18540 0.25 +0.2
3,848,177 - BWI76_RS18540 0.47 -0.1
3,848,181 + BWI76_RS18540 0.48 +0.4
3,848,207 + BWI76_RS18540 0.58 +0.2
3,848,383 + -0.9
3,848,399 + +0.1
3,848,403 - +0.2
3,848,480 - -0.3
3,848,480 - -0.7
3,848,480 - -0.7
3,848,530 + -1.1
3,848,530 + +0.3
3,848,530 + -0.2
3,848,673 + BWI76_RS18545 0.16 -0.8
3,848,715 - BWI76_RS18545 0.18 -0.4
3,848,822 - BWI76_RS18545 0.26 -0.4
3,849,103 - BWI76_RS18545 0.45 -0.3

Or see this region's nucleotide sequence