Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09385 and BWI76_RS09390 overlap by 4 nucleotides BWI76_RS09390 and BWI76_RS09395 overlap by 4 nucleotides
BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291
_RS09385
BWI76_RS09390: BWI76_RS09390 - phage tail protein, at 1,970,288 to 1,970,773
_RS09390
BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855
_RS09395
Position (kb)
1970
1971 Strain fitness (log2 ratio)
-1
0
1 at 1969.478 kb on - strand, within BWI76_RS09385 at 1969.623 kb on - strand, within BWI76_RS09385 at 1969.623 kb on - strand, within BWI76_RS09385 at 1969.717 kb on - strand, within BWI76_RS09385 at 1970.375 kb on + strand, within BWI76_RS09390 at 1970.560 kb on - strand, within BWI76_RS09390 at 1970.642 kb on + strand, within BWI76_RS09390 at 1970.698 kb on + strand, within BWI76_RS09390 at 1970.770 kb on - strand at 1970.812 kb on + strand at 1971.182 kb on + strand, within BWI76_RS09395 at 1971.190 kb on - strand, within BWI76_RS09395 at 1971.309 kb on + strand, within BWI76_RS09395 at 1971.311 kb on + strand, within BWI76_RS09395 at 1971.574 kb on - strand, within BWI76_RS09395 at 1971.617 kb on - strand at 1971.657 kb on + strand, within BWI76_RS09395 at 1971.684 kb on + strand, within BWI76_RS09395 at 1971.713 kb on - strand, within BWI76_RS09395 at 1971.745 kb on - strand, within BWI76_RS09395 at 1971.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 1,969,478 - BWI76_RS09385 0.69 -0.1 1,969,623 - BWI76_RS09385 0.75 +0.5 1,969,623 - BWI76_RS09385 0.75 +0.1 1,969,717 - BWI76_RS09385 0.78 -0.5 1,970,375 + BWI76_RS09390 0.18 +0.3 1,970,560 - BWI76_RS09390 0.56 +1.3 1,970,642 + BWI76_RS09390 0.73 -0.3 1,970,698 + BWI76_RS09390 0.84 +0.4 1,970,770 - +0.6 1,970,812 + +0.9 1,971,182 + BWI76_RS09395 0.38 -0.9 1,971,190 - BWI76_RS09395 0.39 -0.5 1,971,309 + BWI76_RS09395 0.50 -0.4 1,971,311 + BWI76_RS09395 0.50 -0.3 1,971,574 - BWI76_RS09395 0.74 +0.2 1,971,617 - +1.7 1,971,657 + BWI76_RS09395 0.82 -0.1 1,971,684 + BWI76_RS09395 0.84 +0.5 1,971,713 - BWI76_RS09395 0.87 +0.0 1,971,745 - BWI76_RS09395 0.90 +0.1 1,971,755 - +0.3
Or see this region's nucleotide sequence