Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09100 and BWI76_RS09105 are separated by 52 nucleotides BWI76_RS09105 and BWI76_RS09110 are separated by 1 nucleotides
BWI76_RS09100: BWI76_RS09100 - glutathione ABC transporter substrate-binding protein GsiB, at 1,922,108 to 1,923,646
_RS09100
BWI76_RS09105: BWI76_RS09105 - glutathione ABC transporter permease GsiC, at 1,923,699 to 1,924,619
_RS09105
BWI76_RS09110: BWI76_RS09110 - glutathione ABC transporter permease GsiD, at 1,924,621 to 1,925,532
_RS09110
Position (kb)
1923
1924
1925 Strain fitness (log2 ratio)
-1
0
1
2 at 1922.996 kb on - strand, within BWI76_RS09100 at 1923.155 kb on + strand, within BWI76_RS09100 at 1923.201 kb on + strand, within BWI76_RS09100 at 1923.496 kb on + strand at 1923.504 kb on - strand at 1923.504 kb on - strand at 1923.504 kb on - strand at 1923.992 kb on + strand, within BWI76_RS09105 at 1924.096 kb on - strand, within BWI76_RS09105 at 1924.452 kb on + strand, within BWI76_RS09105 at 1924.671 kb on + strand at 1924.681 kb on + strand at 1924.754 kb on + strand, within BWI76_RS09110 at 1924.779 kb on + strand, within BWI76_RS09110 at 1924.996 kb on + strand, within BWI76_RS09110
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 1,922,996 - BWI76_RS09100 0.58 +0.8 1,923,155 + BWI76_RS09100 0.68 +1.6 1,923,201 + BWI76_RS09100 0.71 +1.1 1,923,496 + +1.5 1,923,504 - +0.3 1,923,504 - +1.0 1,923,504 - +0.7 1,923,992 + BWI76_RS09105 0.32 +0.5 1,924,096 - BWI76_RS09105 0.43 +0.6 1,924,452 + BWI76_RS09105 0.82 +0.7 1,924,671 + +0.5 1,924,681 + +0.6 1,924,754 + BWI76_RS09110 0.15 +2.2 1,924,779 + BWI76_RS09110 0.17 +0.5 1,924,996 + BWI76_RS09110 0.41 +0.4
Or see this region's nucleotide sequence