Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00790 and BWI76_RS00795 are separated by 39 nucleotides BWI76_RS00795 and BWI76_RS00800 are separated by 91 nucleotides
BWI76_RS00790: BWI76_RS00790 - bifunctional aspartokinase II/homoserine dehydrogenase II, at 160,976 to 163,408
_RS00790
BWI76_RS00795: BWI76_RS00795 - carboxymuconolactone decarboxylase, at 163,448 to 163,819
_RS00795
BWI76_RS00800: BWI76_RS00800 - LysR family transcriptional regulator, at 163,911 to 164,816
_RS00800
Position (kb) 163
164 Strain fitness (log2 ratio) -1
0
1 at 162.769 kb on + strand, within BWI76_RS00790 at 162.812 kb on - strand, within BWI76_RS00790 at 162.843 kb on + strand, within BWI76_RS00790 at 162.911 kb on - strand, within BWI76_RS00790 at 163.095 kb on + strand, within BWI76_RS00790 at 163.183 kb on + strand at 163.191 kb on - strand at 163.379 kb on + strand at 163.613 kb on - strand, within BWI76_RS00795 at 163.650 kb on - strand, within BWI76_RS00795 at 163.740 kb on - strand, within BWI76_RS00795 at 163.778 kb on + strand, within BWI76_RS00795 at 163.799 kb on + strand at 163.822 kb on - strand at 163.839 kb on - strand at 163.866 kb on + strand at 163.889 kb on - strand at 164.060 kb on + strand at 164.154 kb on + strand, within BWI76_RS00800 at 164.233 kb on + strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.464 kb on + strand, within BWI76_RS00800 at 164.734 kb on - strand at 164.739 kb on - strand at 164.745 kb on - strand at 164.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 162,769 + BWI76_RS00790 0.74 -0.4 162,812 - BWI76_RS00790 0.75 +0.1 162,843 + BWI76_RS00790 0.77 -0.0 162,911 - BWI76_RS00790 0.80 +0.0 163,095 + BWI76_RS00790 0.87 +0.3 163,183 + -0.1 163,191 - -0.7 163,379 + -0.9 163,613 - BWI76_RS00795 0.44 +1.6 163,650 - BWI76_RS00795 0.54 -1.2 163,740 - BWI76_RS00795 0.78 +0.7 163,778 + BWI76_RS00795 0.89 +0.6 163,799 + +0.3 163,822 - +0.2 163,839 - -0.1 163,866 + -0.0 163,889 - +0.5 164,060 + +0.6 164,154 + BWI76_RS00800 0.27 +0.6 164,233 + BWI76_RS00800 0.36 +0.2 164,241 - BWI76_RS00800 0.36 -0.1 164,241 - BWI76_RS00800 0.36 -0.4 164,464 + BWI76_RS00800 0.61 +0.3 164,734 - -0.8 164,739 - +0.1 164,745 - -0.1 164,791 - +0.8
Or see this region's nucleotide sequence