Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19225

Experiment: Recovery broth with Gentamicin 0.4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Gentamicin 0.4 mM
2,089,806	-		BBR_RS19220	0.64	-1.8
2,089,808	+		BBR_RS19220	0.64	+0.2
2,089,808	+		BBR_RS19220	0.64	-1.6
2,089,808	+		BBR_RS19220	0.64	+2.3
2,089,808	+		BBR_RS19220	0.64	-1.3
2,089,810	+		BBR_RS19220	0.64	-2.9
2,089,814	-		BBR_RS19220	0.65	+0.4
2,089,815	+		BBR_RS19220	0.65	+0.2
2,089,823	-		BBR_RS19220	0.65	+1.1
2,089,845	-		BBR_RS19220	0.66	-1.1
2,089,845	-		BBR_RS19220	0.66	+0.2
2,089,846	+		BBR_RS19220	0.66	-1.9
2,089,846	+		BBR_RS19220	0.66	-0.9
2,089,855	-		BBR_RS19220	0.66	-0.0
2,089,864	+		BBR_RS19220	0.67	-0.7
2,089,869	+		BBR_RS19220	0.67	-0.3
2,089,874	+		BBR_RS19220	0.67	-1.8
2,089,882	-		BBR_RS19220	0.68	+0.2
2,089,882	-		BBR_RS19220	0.68	-1.2
2,089,882	-		BBR_RS19220	0.68	+2.0
2,089,882	-		BBR_RS19220	0.68	+0.2
2,089,887	+		BBR_RS19220	0.68	+0.1
2,089,887	+		BBR_RS19220	0.68	-2.5
2,089,887	+		BBR_RS19220	0.68	-1.1
2,089,887	+		BBR_RS19220	0.68	+1.4
2,089,913	+		BBR_RS19220	0.69	-2.0
2,089,921	-		BBR_RS19220	0.69	-0.1
2,089,928	+		BBR_RS19220	0.69	-1.2
2,089,936	-		BBR_RS19220	0.70	+0.3
2,089,942	-		BBR_RS19220	0.70	+1.6
2,089,951	-		BBR_RS19220	0.70	-1.2
2,089,953	+		BBR_RS19220	0.71	+0.4
2,089,953	+		BBR_RS19220	0.71	+0.1
2,089,953	+		BBR_RS19220	0.71	-0.5
2,089,953	+		BBR_RS19220	0.71	+1.8
2,089,956	-		BBR_RS19220	0.71	+0.2
2,089,961	-		BBR_RS19220	0.71	+1.7
2,089,961	-		BBR_RS19220	0.71	+0.0
2,089,980	-		BBR_RS19220	0.72	-2.3
2,089,980	-		BBR_RS19220	0.72	+2.8
2,090,024	-		BBR_RS19220	0.74	-2.2
2,090,026	-		BBR_RS19220	0.74	-1.8
2,090,033	+		BBR_RS19220	0.74	-1.5
2,090,037	+		BBR_RS19220	0.74	+2.3
2,090,057	-		BBR_RS19220	0.75	+1.1
2,090,064	+		BBR_RS19220	0.75	-2.2
2,090,073	+		BBR_RS19220	0.76	-1.4
2,090,085	+		BBR_RS19220	0.76	-0.6
2,090,105	-		BBR_RS19220	0.77	-2.6
2,090,110	+		BBR_RS19220	0.77	-0.4
2,090,126	-		BBR_RS19220	0.78	+2.2
2,090,142	+		BBR_RS19220	0.79	+0.5
2,090,147	-		BBR_RS19220	0.79	-1.3
2,090,150	-		BBR_RS19220	0.79	+1.8
2,090,154	+		BBR_RS19220	0.79	-2.3
2,090,154	+		BBR_RS19220	0.79	-1.8
2,090,154	+		BBR_RS19220	0.79	-0.6
2,090,154	+		BBR_RS19220	0.79	+1.8
2,090,154	+		BBR_RS19220	0.79	-2.2
2,090,154	+		BBR_RS19220	0.79	+0.3
2,090,154	+		BBR_RS19220	0.79	+1.1
2,090,162	-		BBR_RS19220	0.80	+1.7
2,090,162	-		BBR_RS19220	0.80	+1.0
2,090,164	+		BBR_RS19220	0.80	+2.7
2,090,167	-		BBR_RS19220	0.80	-0.7
2,090,172	-		BBR_RS19220	0.80	+1.8
2,090,197	+		BBR_RS19220	0.81	-0.3
2,090,197	+		BBR_RS19220	0.81	-1.1
2,090,197	+		BBR_RS19220	0.81	-0.1
2,090,197	+		BBR_RS19220	0.81	+1.4
2,090,197	+		BBR_RS19220	0.81	-1.1
2,090,197	+		BBR_RS19220	0.81	+0.2
2,090,197	+		BBR_RS19220	0.81	-1.4
2,090,197	+		BBR_RS19220	0.81	-3.1
2,090,197	+		BBR_RS19220	0.81	+0.8
2,090,197	+		BBR_RS19220	0.81	-2.0
2,090,199	+		BBR_RS19220	0.81	+3.2
2,090,199	+		BBR_RS19220	0.81	+3.1
2,090,205	-		BBR_RS19220	0.81	+0.3
2,090,205	-		BBR_RS19220	0.81	-0.8
2,090,205	-		BBR_RS19220	0.81	-1.5
2,090,205	-		BBR_RS19220	0.81	-0.5
2,090,205	-		BBR_RS19220	0.81	-1.3
2,090,205	-		BBR_RS19220	0.81	-0.0
2,090,213	+		BBR_RS19220	0.82	-0.2
2,090,213	+		BBR_RS19220	0.82	+0.1
2,090,236	+		BBR_RS19220	0.83	+0.8
2,090,237	-		BBR_RS19220	0.83	-1.7
2,090,244	-		BBR_RS19220	0.83	+0.5
2,090,244	-		BBR_RS19220	0.83	-2.0
2,090,246	+		BBR_RS19220	0.83	+0.3
2,090,247	+		BBR_RS19220	0.83	+0.4
2,090,247	+		BBR_RS19220	0.83	+0.8
2,090,266	-		BBR_RS19220	0.84	-2.1
2,090,281	+		BBR_RS19220	0.85	-2.1
2,090,286	+		BBR_RS19220	0.85	+1.4
2,090,286	+		BBR_RS19220	0.85	+1.7
2,090,286	+		BBR_RS19220	0.85	+1.4
2,090,286	+		BBR_RS19220	0.85	-0.6
2,090,286	+		BBR_RS19220	0.85	+2.2
2,090,289	-		BBR_RS19220	0.85	+1.1
2,090,289	-		BBR_RS19220	0.85	+1.7
2,090,301	+		BBR_RS19220	0.85	-2.4
2,090,301	-		BBR_RS19220	0.85	-1.2
2,090,306	+		BBR_RS19220	0.86	-1.4
2,090,306	+		BBR_RS19220	0.86	+0.5
2,090,306	+		BBR_RS19220	0.86	+1.0
2,090,330	-		BBR_RS19220	0.87	-0.5
2,090,378	-		BBR_RS19220	0.89	+1.8
2,090,381	+		BBR_RS19220	0.89	+0.2
2,090,381	+		BBR_RS19220	0.89	+0.8
2,090,389	-		BBR_RS19220	0.89	+1.1
2,090,416	-				+0.8
2,090,416	-				+0.5
2,090,422	+				+0.1
2,090,430	-				-2.1
2,090,430	-				-1.5
2,090,433	+				-0.5
2,090,456	+				+1.5
2,090,456	+				-1.7
2,090,457	-				-0.8
2,090,468	-				-1.2
2,090,470	+				-1.2
2,090,483	+				+0.0
2,090,483	+				-0.2
2,090,483	-				-0.0
2,090,491	-				+1.5
2,090,533	+				-1.7
2,090,533	+				-2.7
2,090,533	+				-1.0
2,090,533	+				+1.1
2,090,541	-				-0.6
2,090,541	-				-1.0
2,090,541	-				+1.6
2,090,541	-				-0.6
2,090,566	-				-1.0
2,090,579	+				+2.6
2,090,579	+				+2.8
2,090,600	+				+0.6
2,090,600	+				+0.5
2,090,641	+				-1.9
2,090,643	+				-2.7
2,090,643	+				-1.4
2,090,643	+				-0.6
2,090,643	+				+1.7
2,090,643	-				+1.0
2,090,643	-				-2.0
2,090,651	+				-0.6
2,090,651	-				-1.2
2,090,651	-				+1.0
2,090,670	+				+0.8
2,090,670	+				+0.9
2,090,670	+				+0.0
2,090,670	+				-1.0
2,090,670	+				+1.0
2,090,675	+				-0.7
2,090,678	-				-1.8
2,090,681	+				-0.7
2,090,681	+				-2.5
2,090,682	+				+2.3
2,090,695	+				+1.1
2,090,703	+				+1.1
2,090,703	-				-0.2
2,090,716	+				-1.3
2,090,737	+				-2.7
2,090,747	-				+1.7
2,090,749	+				-1.5
2,090,749	+				+1.8
2,090,749	+				+0.4
2,090,757	-				+0.8
2,090,757	-				-1.2
2,090,757	-				+2.6
2,090,757	-				+3.4
2,090,771	-				-0.7
2,090,772	-				+1.3
2,090,776	+				-1.5
2,090,782	+				-1.1
2,090,782	+				-2.0
2,090,782	+				+0.6
2,090,782	+				+0.9
2,090,782	+				-1.8
2,090,782	+				-1.7
2,090,782	+				+1.7
2,090,790	-				+2.2
2,090,790	-				-0.2
2,090,790	-				-0.3
2,090,790	-				+0.6
2,090,790	-				+1.2
2,090,790	-				+1.0
2,090,790	-				+1.7
2,090,790	-				-0.9
2,090,790	-				+1.7
2,090,790	-				-1.6
2,090,790	-				+1.4
2,090,790	-				+0.9
2,090,792	+				+0.7
2,090,799	+				-1.0
2,090,799	+				+0.4
2,090,799	+				+1.4
2,090,799	+				+0.4
2,090,799	+				-2.4
2,090,799	+				-0.8
2,090,800	-				-1.8
2,090,807	-				-1.6
2,090,821	-				+0.7
2,090,838	+				-2.3
2,090,841	-				-2.6
2,090,841	-				-1.2
2,090,870	+				-0.0
2,090,880	+				-2.3
2,090,887	+		BBR_RS19225	0.10	-0.7
2,090,887	+		BBR_RS19225	0.10	+0.1
2,090,895	-		BBR_RS19225	0.11	-1.0
2,090,915	-		BBR_RS19225	0.14	-2.3
2,090,916	-		BBR_RS19225	0.14	-1.7
2,090,916	-		BBR_RS19225	0.14	-2.0
2,090,919	+		BBR_RS19225	0.14	-0.7
2,090,921	-		BBR_RS19225	0.14	-1.5
2,090,926	+		BBR_RS19225	0.15	+1.4
2,090,926	+		BBR_RS19225	0.15	-2.4
2,090,926	+		BBR_RS19225	0.15	-1.4
2,090,926	+		BBR_RS19225	0.15	-1.2
2,090,926	+		BBR_RS19225	0.15	+1.0
2,090,926	+		BBR_RS19225	0.15	-2.1
2,090,926	+		BBR_RS19225	0.15	+0.0
2,090,926	+		BBR_RS19225	0.15	+1.2
2,090,926	+		BBR_RS19225	0.15	-1.6
2,090,927	-		BBR_RS19225	0.15	-1.1
2,090,934	-		BBR_RS19225	0.16	-2.4
2,090,934	-		BBR_RS19225	0.16	-2.6
2,090,936	+		BBR_RS19225	0.16	+4.5
2,090,936	+		BBR_RS19225	0.16	+0.2
2,090,951	+		BBR_RS19225	0.18	+0.9
2,090,951	-		BBR_RS19225	0.18	+1.5
2,090,953	+		BBR_RS19225	0.18	+0.3
2,090,956	-		BBR_RS19225	0.19	-1.5
2,090,963	+		BBR_RS19225	0.20	+1.8
2,090,974	+		BBR_RS19225	0.21	-0.3
2,090,978	-		BBR_RS19225	0.21	+0.2
2,090,990	-		BBR_RS19225	0.23	-1.1
2,090,997	+		BBR_RS19225	0.24	-1.9
2,090,997	-		BBR_RS19225	0.24	+1.9
2,090,998	-		BBR_RS19225	0.24	-0.1
2,090,998	-		BBR_RS19225	0.24	-0.2
2,091,013	+		BBR_RS19225	0.26	+2.1
2,091,019	+		BBR_RS19225	0.26	+0.2
2,091,019	+		BBR_RS19225	0.26	-0.0
2,091,037	-		BBR_RS19225	0.29	+2.6
2,091,043	+		BBR_RS19225	0.29	-1.7
2,091,062	-		BBR_RS19225	0.32	-1.3
2,091,071	-		BBR_RS19225	0.33	+0.5
2,091,071	-		BBR_RS19225	0.33	-2.2
2,091,071	-		BBR_RS19225	0.33	-0.5
2,091,084	-		BBR_RS19225	0.34	+0.7
2,091,089	+		BBR_RS19225	0.35	-0.9
2,091,092	-		BBR_RS19225	0.35	-0.3
2,091,135	-		BBR_RS19225	0.41	-0.2
2,091,168	-		BBR_RS19225	0.45	+1.4
2,091,178	+		BBR_RS19225	0.46	-1.8
2,091,194	-		BBR_RS19225	0.48	-3.2
2,091,214	+		BBR_RS19225	0.50	-0.5
2,091,214	+		BBR_RS19225	0.50	+1.7
2,091,214	+		BBR_RS19225	0.50	-0.9
2,091,214	+		BBR_RS19225	0.50	+1.3
2,091,214	-		BBR_RS19225	0.50	+1.7
2,091,232	+		BBR_RS19225	0.52	-2.6
2,091,232	+		BBR_RS19225	0.52	-1.0
2,091,240	+		BBR_RS19225	0.53	-1.3
2,091,249	-		BBR_RS19225	0.54	-0.2
2,091,291	+		BBR_RS19225	0.59	+0.3
2,091,294	-		BBR_RS19225	0.60	-1.8
2,091,320	+		BBR_RS19225	0.63	+2.4
2,091,321	-		BBR_RS19225	0.63	+1.3
2,091,327	-		BBR_RS19225	0.64	-0.7
2,091,343	-		BBR_RS19225	0.66	-0.7
2,091,363	+		BBR_RS19225	0.68	-0.8
2,091,363	+		BBR_RS19225	0.68	+0.8
2,091,363	+		BBR_RS19225	0.68	+1.3
2,091,363	+		BBR_RS19225	0.68	-2.1
2,091,363	+		BBR_RS19225	0.68	+0.7
2,091,363	+		BBR_RS19225	0.68	+1.0
2,091,363	+		BBR_RS19225	0.68	-0.0
2,091,363	+		BBR_RS19225	0.68	-1.5
2,091,363	+		BBR_RS19225	0.68	+1.5
2,091,366	-		BBR_RS19225	0.69	+0.7
2,091,371	-		BBR_RS19225	0.69	-0.8
2,091,371	-		BBR_RS19225	0.69	+0.6
2,091,371	-		BBR_RS19225	0.69	+0.4
2,091,371	-		BBR_RS19225	0.69	+1.0
2,091,371	-		BBR_RS19225	0.69	-2.3
2,091,371	-		BBR_RS19225	0.69	+2.1
2,091,371	-		BBR_RS19225	0.69	-2.6
2,091,373	+		BBR_RS19225	0.69	-1.0
2,091,376	-		BBR_RS19225	0.70	+0.3
2,091,381	-		BBR_RS19225	0.70	+1.8
2,091,382	+		BBR_RS19225	0.71	+0.7
2,091,390	-		BBR_RS19225	0.72	-1.3
2,091,392	-		BBR_RS19225	0.72	-1.9
2,091,400	+		BBR_RS19225	0.73	+2.7
2,091,406	+		BBR_RS19225	0.73	+1.5
2,091,432	-		BBR_RS19225	0.77	-0.8
2,091,437	-		BBR_RS19225	0.77	-0.9
2,091,439	+		BBR_RS19225	0.77	-1.1
2,091,473	-		BBR_RS19225	0.82	+0.9
2,091,473	-		BBR_RS19225	0.82	-1.8
2,091,498	+		BBR_RS19225	0.85	+0.6
2,091,498	+		BBR_RS19225	0.85	-1.3
2,091,517	+		BBR_RS19225	0.87	-1.8
2,091,525	-		BBR_RS19225	0.88	+0.8
2,091,525	-		BBR_RS19225	0.88	+1.1
2,091,525	-		BBR_RS19225	0.88	-1.0
2,091,531	+		BBR_RS19225	0.89	-1.9
2,091,534	-		BBR_RS19225	0.89	-0.3
2,091,534	-		BBR_RS19225	0.89	+1.2
2,091,534	-		BBR_RS19225	0.89	-1.8
2,091,536	+		BBR_RS19225	0.89	+1.0
2,091,553	+				-1.1
2,091,553	+				+1.0
2,091,559	-				+1.6
2,091,576	+				+1.8
2,091,584	-				-2.2
2,091,589	-				+0.3
2,091,599	+				-1.5
2,091,607	-				-0.6
2,091,607	-				-2.1
2,091,607	-				+2.4
2,091,607	-				+1.2
2,091,607	-				+0.8
2,091,609	+				-1.2
2,091,632	+				+0.8
2,091,633	+				+0.3
2,091,633	+				+1.0
2,091,633	+				-1.2
2,091,633	+				-1.4
2,091,633	+				+1.3
2,091,641	-				-0.6
2,091,641	-				+2.1
2,091,646	+				+0.9
2,091,647	-				+0.2
2,091,656	+				+0.7
2,091,656	-				+0.7
2,091,657	+				+0.4
2,091,666	+				-1.2
2,091,719	-		BBR_RS19230	0.10	-0.9
2,091,744	-		BBR_RS19230	0.13	+1.3
2,091,765	-		BBR_RS19230	0.15	-0.5
2,091,765	-		BBR_RS19230	0.15	+0.4
2,091,806	+		BBR_RS19230	0.20	-1.2
2,091,812	+		BBR_RS19230	0.20	+0.7
2,091,824	+		BBR_RS19230	0.22	-0.9
2,091,842	+		BBR_RS19230	0.23	+0.5
2,091,863	+		BBR_RS19230	0.26	+1.0
2,091,864	+		BBR_RS19230	0.26	-1.2
2,091,868	+		BBR_RS19230	0.26	-0.5
2,091,872	-		BBR_RS19230	0.27	+0.9
2,091,874	+		BBR_RS19230	0.27	-0.6
2,091,913	-		BBR_RS19230	0.31	+0.2
2,091,922	+		BBR_RS19230	0.32	+1.3
2,091,925	-		BBR_RS19230	0.32	-1.0
2,091,925	-		BBR_RS19230	0.32	-2.0
2,091,989	-		BBR_RS19230	0.39	-0.6
2,091,989	-		BBR_RS19230	0.39	+1.5
2,091,996	+		BBR_RS19230	0.40	+0.3
2,092,000	+		BBR_RS19230	0.40	-1.8
2,092,004	-		BBR_RS19230	0.41	-0.5
2,092,004	-		BBR_RS19230	0.41	+1.6
2,092,004	-		BBR_RS19230	0.41	-0.9
2,092,006	+		BBR_RS19230	0.41	+1.8
2,092,006	+		BBR_RS19230	0.41	-2.1
2,092,006	-		BBR_RS19230	0.41	+2.2
2,092,014	-		BBR_RS19230	0.42	+1.6
2,092,030	-		BBR_RS19230	0.43	+3.1
2,092,058	-		BBR_RS19230	0.46	+1.0
2,092,108	+		BBR_RS19230	0.52	-1.2
2,092,117	+		BBR_RS19230	0.53	+1.3
2,092,142	+		BBR_RS19230	0.55	-0.2
2,092,152	+		BBR_RS19230	0.56	-1.9
2,092,154	+		BBR_RS19230	0.57	-1.4
2,092,193	+		BBR_RS19230	0.61	-2.0
2,092,217	-		BBR_RS19230	0.63	+1.1
2,092,230	+		BBR_RS19230	0.65	+2.3
2,092,230	+		BBR_RS19230	0.65	+0.5
2,092,232	-		BBR_RS19230	0.65	+2.2
2,092,238	-		BBR_RS19230	0.65	-1.0
2,092,247	+		BBR_RS19230	0.66	+0.8
2,092,247	+		BBR_RS19230	0.66	+1.0
2,092,258	+		BBR_RS19230	0.68	-0.5
2,092,258	+		BBR_RS19230	0.68	+2.2
2,092,260	+		BBR_RS19230	0.68	+0.4
2,092,260	+		BBR_RS19230	0.68	-0.5
2,092,268	-		BBR_RS19230	0.69	+2.1
2,092,283	-		BBR_RS19230	0.70	+0.8
2,092,294	+		BBR_RS19230	0.71	-2.8
2,092,318	-		BBR_RS19230	0.74	+0.1
2,092,344	-		BBR_RS19230	0.77	+1.5
2,092,344	-		BBR_RS19230	0.77	+1.0
2,092,345	-		BBR_RS19230	0.77	+1.8
2,092,345	-		BBR_RS19230	0.77	-2.7
2,092,345	-		BBR_RS19230	0.77	+0.0
2,092,352	-		BBR_RS19230	0.77	-2.2
2,092,395	+		BBR_RS19230	0.82	-1.5
2,092,395	-		BBR_RS19230	0.82	+0.5
2,092,407	+		BBR_RS19230	0.83	+0.4
2,092,466	+		BBR_RS19230	0.90	+0.0
2,092,466	+		BBR_RS19230	0.90	-0.8
2,092,474	+				+1.5
2,092,481	+				-1.0
2,092,502	+				+0.8
2,092,513	+				+2.0
2,092,517	+				-3.5
2,092,522	+				+2.2
2,092,522	+				-0.8
2,092,522	+				-2.5
2,092,522	+				-0.3
2,092,522	+				+0.5
2,092,522	+				-1.6
2,092,522	+				-1.9
2,092,522	+				+2.1
2,092,522	+				+1.2
2,092,522	+				+1.6
2,092,522	+				-2.1
2,092,522	+				-0.2
2,092,522	+				-1.5
2,092,522	+				+1.3
2,092,522	+				-1.3
2,092,530	-				+1.5
2,092,530	-				-1.2
2,092,530	-				-1.7
2,092,530	-				-2.0
2,092,530	-				-2.5
2,092,530	-				-1.7
2,092,592	+				-2.6
2,092,600	-				-1.0
2,092,600	-				-1.6
2,092,600	-				+0.1
2,092,600	-				+0.2
2,092,615	-				-1.1
2,092,615	-				-0.6