Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21680

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21675 and HSERO_RS21680 are separated by 16 nucleotidesHSERO_RS21680 and HSERO_RS21685 are separated by 17 nucleotides HSERO_RS21675: HSERO_RS21675 - insertase, at 4,962,254 to 4,963,951 _RS21675 HSERO_RS21680: HSERO_RS21680 - hypothetical protein, at 4,963,968 to 4,964,330 _RS21680 HSERO_RS21685: HSERO_RS21685 - ribonuclease P, at 4,964,348 to 4,964,653 _RS21685 Position (kb) 4963 4964 4965Strain fitness (log2 ratio) -1 0 1at 4965.247 kb on - strandat 4965.286 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,965,247 - -1.4
4,965,286 + +0.4

Or see this region's nucleotide sequence