Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04565 and HSERO_RS04570 are separated by 2 nucleotides HSERO_RS04570 and HSERO_RS04575 are separated by 194 nucleotides HSERO_RS04575 and HSERO_RS04580 are separated by 61 nucleotides
HSERO_RS04565: HSERO_RS04565 - bacteriophage capsid portal protein, at 997,557 to 998,609
_RS04565
HSERO_RS04570: HSERO_RS04570 - hypothetical protein, at 998,612 to 998,824
_RS04570
HSERO_RS04575: HSERO_RS04575 - receiver domain-containing protein, at 999,019 to 999,396
_RS04575
HSERO_RS04580: HSERO_RS04580 - hypothetical protein, at 999,458 to 999,676
_RS04580
Position (kb) 998
999 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 997.646 kb on - strand at 997.808 kb on + strand, within HSERO_RS04565 at 997.868 kb on - strand, within HSERO_RS04565 at 997.909 kb on - strand, within HSERO_RS04565 at 998.007 kb on + strand, within HSERO_RS04565 at 998.065 kb on + strand, within HSERO_RS04565 at 998.093 kb on - strand, within HSERO_RS04565 at 998.148 kb on + strand, within HSERO_RS04565 at 998.332 kb on + strand, within HSERO_RS04565 at 998.445 kb on - strand, within HSERO_RS04565 at 998.585 kb on + strand at 998.674 kb on - strand, within HSERO_RS04570 at 998.789 kb on + strand, within HSERO_RS04570 at 998.796 kb on + strand, within HSERO_RS04570 at 998.796 kb on + strand, within HSERO_RS04570 at 998.796 kb on + strand, within HSERO_RS04570 at 998.802 kb on + strand, within HSERO_RS04570 at 998.804 kb on - strand at 998.857 kb on - strand at 998.994 kb on + strand at 999.002 kb on + strand at 999.002 kb on + strand at 999.031 kb on - strand at 999.041 kb on + strand at 999.046 kb on + strand at 999.046 kb on + strand at 999.049 kb on - strand at 999.054 kb on - strand at 999.096 kb on + strand, within HSERO_RS04575 at 999.118 kb on - strand, within HSERO_RS04575 at 999.124 kb on - strand, within HSERO_RS04575 at 999.129 kb on - strand, within HSERO_RS04575 at 999.275 kb on + strand, within HSERO_RS04575 at 999.277 kb on + strand, within HSERO_RS04575 at 999.282 kb on + strand, within HSERO_RS04575 at 999.282 kb on + strand, within HSERO_RS04575 at 999.285 kb on - strand, within HSERO_RS04575 at 999.287 kb on + strand, within HSERO_RS04575 at 999.290 kb on - strand, within HSERO_RS04575 at 999.290 kb on - strand, within HSERO_RS04575 at 999.305 kb on + strand, within HSERO_RS04575 at 999.356 kb on - strand, within HSERO_RS04575 at 999.385 kb on - strand at 999.386 kb on - strand at 999.405 kb on - strand at 999.405 kb on - strand at 999.432 kb on + strand at 999.440 kb on - strand at 999.476 kb on + strand at 999.512 kb on + strand, within HSERO_RS04580 at 999.514 kb on + strand, within HSERO_RS04580 at 999.518 kb on + strand, within HSERO_RS04580 at 999.538 kb on + strand, within HSERO_RS04580 at 999.538 kb on + strand, within HSERO_RS04580 at 999.538 kb on + strand, within HSERO_RS04580 at 999.541 kb on + strand, within HSERO_RS04580 at 999.546 kb on - strand, within HSERO_RS04580 at 999.579 kb on - strand, within HSERO_RS04580 at 999.613 kb on + strand, within HSERO_RS04580 at 999.652 kb on + strand, within HSERO_RS04580 at 999.665 kb on - strand at 999.707 kb on + strand at 999.707 kb on + strand at 999.707 kb on + strand at 999.709 kb on + strand at 999.710 kb on + strand at 999.712 kb on + strand at 999.715 kb on - strand at 999.720 kb on - strand at 999.720 kb on - strand at 999.731 kb on + strand at 999.739 kb on - strand at 999.749 kb on - strand at 999.751 kb on - strand at 999.795 kb on - strand at 999.801 kb on + strand at 999.809 kb on - strand at 999.809 kb on - strand at 999.809 kb on - strand at 999.809 kb on - strand at 999.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 997,646 - +1.7 997,808 + HSERO_RS04565 0.24 -0.0 997,868 - HSERO_RS04565 0.30 +0.5 997,909 - HSERO_RS04565 0.33 -0.3 998,007 + HSERO_RS04565 0.43 -0.1 998,065 + HSERO_RS04565 0.48 +0.6 998,093 - HSERO_RS04565 0.51 +1.2 998,148 + HSERO_RS04565 0.56 -1.2 998,332 + HSERO_RS04565 0.74 -0.7 998,445 - HSERO_RS04565 0.84 +0.2 998,585 + -1.3 998,674 - HSERO_RS04570 0.29 -0.6 998,789 + HSERO_RS04570 0.83 +0.1 998,796 + HSERO_RS04570 0.86 -0.6 998,796 + HSERO_RS04570 0.86 -0.9 998,796 + HSERO_RS04570 0.86 -0.1 998,802 + HSERO_RS04570 0.89 -1.0 998,804 - -0.2 998,857 - +0.2 998,994 + +1.5 999,002 + -2.5 999,002 + +1.1 999,031 - +0.1 999,041 + -1.0 999,046 + +0.2 999,046 + +0.4 999,049 - +0.2 999,054 - -0.0 999,096 + HSERO_RS04575 0.20 +0.9 999,118 - HSERO_RS04575 0.26 -0.2 999,124 - HSERO_RS04575 0.28 -0.7 999,129 - HSERO_RS04575 0.29 -0.7 999,275 + HSERO_RS04575 0.68 -0.9 999,277 + HSERO_RS04575 0.68 +0.3 999,282 + HSERO_RS04575 0.70 -1.9 999,282 + HSERO_RS04575 0.70 -0.1 999,285 - HSERO_RS04575 0.70 +0.6 999,287 + HSERO_RS04575 0.71 -0.2 999,290 - HSERO_RS04575 0.72 -1.2 999,290 - HSERO_RS04575 0.72 +0.4 999,305 + HSERO_RS04575 0.76 +0.0 999,356 - HSERO_RS04575 0.89 +0.5 999,385 - -0.8 999,386 - -0.4 999,405 - +0.3 999,405 - -0.1 999,432 + -0.2 999,440 - -0.9 999,476 + +0.1 999,512 + HSERO_RS04580 0.25 +0.1 999,514 + HSERO_RS04580 0.26 +0.1 999,518 + HSERO_RS04580 0.27 -1.4 999,538 + HSERO_RS04580 0.37 -0.1 999,538 + HSERO_RS04580 0.37 -0.1 999,538 + HSERO_RS04580 0.37 +1.0 999,541 + HSERO_RS04580 0.38 +0.3 999,546 - HSERO_RS04580 0.40 -0.3 999,579 - HSERO_RS04580 0.55 +0.1 999,613 + HSERO_RS04580 0.71 +2.8 999,652 + HSERO_RS04580 0.89 +0.6 999,665 - -1.2 999,707 + +0.1 999,707 + +0.7 999,707 + -1.5 999,709 + +0.3 999,710 + -0.1 999,712 + -0.2 999,715 - -0.5 999,720 - -1.5 999,720 - -1.9 999,731 + +0.6 999,739 - -1.5 999,749 - +0.0 999,751 - +1.3 999,795 - -1.0 999,801 + -0.9 999,809 - +0.6 999,809 - +0.9 999,809 - -0.1 999,809 - -0.2 999,818 - -1.7
Or see this region's nucleotide sequence