Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03450 and HSERO_RS03455 are separated by 9 nucleotides HSERO_RS03455 and HSERO_RS03460 are separated by 30 nucleotides HSERO_RS03460 and HSERO_RS03465 are separated by 93 nucleotides HSERO_RS03465 and HSERO_RS03470 are separated by 219 nucleotides
HSERO_RS03450: HSERO_RS03450 - energy transducer protein TonB, at 754,092 to 754,790
_RS03450
HSERO_RS03455: HSERO_RS03455 - regulatory or redox protein complexing with Bfr, in iron storage and mobility, at 754,800 to 755,027
_RS03455
HSERO_RS03460: HSERO_RS03460 - hypothetical protein, at 755,058 to 755,381
_RS03460
HSERO_RS03465: HSERO_RS03465 - hemin transporter, at 755,475 to 755,663
_RS03465
HSERO_RS03470: HSERO_RS03470 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 755,883 to 756,989
_RS03470
Position (kb) 755
756 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 754.384 kb on - strand, within HSERO_RS03450 at 754.502 kb on + strand, within HSERO_RS03450 at 754.722 kb on + strand at 754.776 kb on - strand at 755.139 kb on + strand, within HSERO_RS03460 at 755.147 kb on + strand, within HSERO_RS03460 at 755.243 kb on - strand, within HSERO_RS03460 at 755.250 kb on + strand, within HSERO_RS03460 at 755.258 kb on - strand, within HSERO_RS03460 at 755.346 kb on - strand, within HSERO_RS03460 at 755.393 kb on + strand at 755.401 kb on - strand at 755.435 kb on + strand at 755.473 kb on + strand at 755.565 kb on + strand, within HSERO_RS03465 at 755.633 kb on + strand, within HSERO_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 754,384 - HSERO_RS03450 0.42 -3.5 754,502 + HSERO_RS03450 0.59 -2.6 754,722 + -4.0 754,776 - -0.2 755,139 + HSERO_RS03460 0.25 -3.5 755,147 + HSERO_RS03460 0.27 -0.7 755,243 - HSERO_RS03460 0.57 -0.0 755,250 + HSERO_RS03460 0.59 -1.1 755,258 - HSERO_RS03460 0.62 -1.9 755,346 - HSERO_RS03460 0.89 +0.1 755,393 + -0.4 755,401 - +0.1 755,435 + -1.6 755,473 + -3.1 755,565 + HSERO_RS03465 0.48 -0.8 755,633 + HSERO_RS03465 0.84 -0.4
Or see this region's nucleotide sequence